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Digital contents have grown dramatically in recent years, leading to increased attention to copyright. Image watermarking has been considered one of the most popular methods for copyright protection. With the recent advancements in applying…

Multimedia · Computer Science 2021-05-25 Maedeh Jamali , Nader Karim , Pejman Khadivi , Shahram Shirani , Shadrokh Samavi

The next-generation sequencers such as Illumina and SOLiD platforms generate a large amount of data, commonly above 10 Gigabytes of text files. Particularly, the SOLiD platform allows the sequencing of multiple samples in a single run,…

With the advent of large language models (LLMs), numerous software service providers (SSPs) are dedicated to developing LLMs customized for code generation tasks, such as CodeLlama and Copilot. However, these LLMs can be leveraged by…

Cryptography and Security · Computer Science 2025-04-22 Kaiwen Ning , Jiachi Chen , Qingyuan Zhong , Tao Zhang , Yanlin Wang , Wei Li , Jingwen Zhang , Jianxing Yu , Yuming Feng , Weizhe Zhang , Zibin Zheng

Given a filtration of simplicial complexes, one usually applies persistent homology and summarizes the results in barcodes. Then, in order to extract statistical information from these barcodes, one needs to compute statistical indicators…

Algebraic Topology · Mathematics 2024-10-08 Alessandro Bravetti , Martín Mijangos , Pablo Padilla

We show the viability of tackling misuses of large language models beyond the identification of machine-generated text. While existing zero-bit watermark methods focus on detection only, some malicious misuses demand tracing the adversary…

Computation and Language · Computer Science 2024-03-21 KiYoon Yoo , Wonhyuk Ahn , Nojun Kwak

With the widespread adoption of Large Language Models (LLMs), concerns about potential misuse have emerged. To this end, watermarking has been adapted to LLM, enabling a simple and effective way to detect and monitor generated text.…

Cryptography and Security · Computer Science 2024-07-22 Duy C. Hoang , Hung T. Q. Le , Rui Chu , Ping Li , Weijie Zhao , Yingjie Lao , Khoa D. Doan

Due to their sequential nature, traditional DNA synthesis methods are expensive in terms of time and resources. They also fabricate multiple copies of the same strand, introducing redundancy. This redundancy can be leveraged to enhance the…

Information Theory · Computer Science 2025-10-29 Frederik Walter , Yonatan Yehezkeally

Large language model (LLM) watermarks enable authentication of text provenance, curb misuse of machine-generated text, and promote trust in AI systems. Current watermarks operate by changing the next-token predictions output by an LLM. The…

Cryptography and Security · Computer Science 2025-12-03 Dor Tsur , Carol Xuan Long , Claudio Mayrink Verdun , Hsiang Hsu , Chen-Fu Chen , Haim Permuter , Sajani Vithana , Flavio P. Calmon

Audio watermarking has been widely applied in copyright protection and source tracing. However, due to the inherent characteristics of audio signals, watermark localization and resistance to desynchronization attacks remain significant…

Cryptography and Security · Computer Science 2025-09-03 Zhenliang Gan , Xiaoxiao Hu , Sheng Li , Zhenxing Qian , Xinpeng Zhang

Linked-Reads technologies, such as 10x Genomics, combine both the high-quality and low cost of short-reads sequencing and a long-range information, through the use of barcodes able to tag reads which originate from a common long DNA…

Genomics · Quantitative Biology 2021-03-30 Pierre Morisse , Claire Lemaitre , Fabrice Legeai

We construct pseudorandom error-correcting codes (or simply pseudorandom codes), which are error-correcting codes with the property that any polynomial number of codewords are pseudorandom to any computationally-bounded adversary. Efficient…

Cryptography and Security · Computer Science 2024-06-19 Miranda Christ , Sam Gunn

We study multi-bit watermarking for data generated by stochastic processes, where a hidden message is embedded during sampling and must be decodable by an authorized detector that possesses side information unavailable to unauthorized…

Information Theory · Computer Science 2026-05-12 Haiyun He , Yepeng Liu , Zhuoer Shen , Ziqiao Wang , Yongyi Mao , Yuheng Bu

DNA synthesis is considered as one of the most expensive components in current DNA storage systems. In this paper, focusing on a common synthesis machine, which generates multiple DNA strands in parallel following a fixed supersequence,we…

Information Theory · Computer Science 2025-05-13 Yajuan Liu , Tolga M. Duman

Watermarking has emerged as an effective solution for copyright protection of synthetic data. However, applying watermarking techniques to synthetic tabular data presents challenges, as tabular data can easily lose their watermarks through…

Cryptography and Security · Computer Science 2026-03-17 Yuyang Xia , Yaoqiang Xu , Chen Qian , Yang Li , Guoliang Li , Jianhua Feng

De novo genome assembly is challenging in highly repetitive regions; however, reference-guided assemblers often suffer from bias. We propose a framework for pangenome-guided sequence assembly, which can resolve short-read data in complex…

Quantum Physics · Physics 2026-02-11 Josh Cudby , James Bonfield , Chenxi Zhou , Richard Durbin , Sergii Strelchuk

We consider error-correcting coding for deoxyribonucleic acid (DNA)-based storage using nanopore sequencing. We model the DNA storage channel as a sampling noise channel where the input data is chunked into $M$ short DNA strands, which are…

Information Theory · Computer Science 2024-06-21 Lorenz Welter , Roman Sokolovskii , Thomas Heinis , Antonia Wachter-Zeh , Eirik Rosnes , Alexandre Graell i Amat

Background: Designing amino acid sequences that are stable in a given target structure amounts to maximizing a conditional probability. A straightforward approach to accomplish this is a nested Monte Carlo where the conformation space is…

Soft Condensed Matter · Physics 2016-08-31 Anders Irbäck , Carsten Peterson , Frank Potthast , Erik Sandelin

We study the problem of watermarking large language models (LLMs) generated text -- one of the most promising approaches for addressing the safety challenges of LLM usage. In this paper, we propose a rigorous theoretical framework to…

Computation and Language · Computer Science 2023-10-16 Xuandong Zhao , Prabhanjan Ananth , Lei Li , Yu-Xiang Wang

Effective training of today's large language models (LLMs) depends on large batches and long sequences for throughput and accuracy. To handle variable-length sequences on hardware accelerators, it is common practice to introduce padding…

Computation and Language · Computer Science 2022-10-07 Mario Michael Krell , Matej Kosec , Sergio P. Perez , Andrew Fitzgibbon

LLM watermarks allow tracing AI-generated texts by inserting a detectable signal into their generated content. Recent works have proposed a wide range of watermarking algorithms, each with distinct designs, usually built using a bottom-up…

Cryptography and Security · Computer Science 2026-02-09 Thibaud Gloaguen , Robin Staab , Nikola Jovanović , Martin Vechev