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A crop can be viewed as a complex system with outputs (e.g. yield) that are affected by inputs of genetic, physiology, pedo-climatic and management information. Application of numerical methods for model exploration assist in evaluating the…

Quantitative Methods · Quantitative Biology 2016-01-26 Pierre Casadebaig , Bangyou Zheng , Scott Chapman , Neil Huth , Robert Faivre , Karine Chenu

Analysis of genomics data is central to nearly all areas of modern biology. Despite significant progress in artificial intelligence (AI) and computational methods, these technologies require significant human oversight to generate novel and…

In this work we demonstrate a rapidly deployable weed classification system that uses visual data to enable autonomous precision weeding without making prior assumptions about which weed species are present in a given field. Previous work…

Computer Vision and Pattern Recognition · Computer Science 2018-04-27 David Hall , Feras Dayoub , Tristan Perez , Chris McCool

Biologists are leading current research on genome characterization (sequencing, alignment, transcription), providing a huge quantity of raw data about many genome organisms. Extracting knowledge from this raw data is an important process…

Quantitative Methods · Quantitative Biology 2007-05-23 Nicolas Férey , Pierre-Emmanuel Gros , Joan Hérisson , Rachid Gherbi

Deep learning has been effective for histology image analysis in digital pathology. However, many current deep learning approaches require large, strongly- or weakly-labeled images and regions of interest, which can be time-consuming and…

Computer Vision and Pattern Recognition · Computer Science 2023-04-07 Joseph DiPalma , Lorenzo Torresani , Saeed Hassanpour

Recent advances in deep neuroevolution have demonstrated that evolutionary algorithms, such as evolution strategies (ES) and genetic algorithms (GA), can scale to train deep neural networks to solve difficult reinforcement learning (RL)…

Neural and Evolutionary Computing · Computer Science 2018-05-04 Rui Wang , Jeff Clune , Kenneth O. Stanley

Charts are the dominant medium for visualizing data, discovering patterns and trends, and communicating data driven insights, yet designing them still requires expensive human effort and expertise, such as selecting appropriate chart types,…

Human-Computer Interaction · Computer Science 2026-05-19 Mohammed Afaan Ansari , Aniruddh Bansal , Tianyi Zhou

Phenotypic variability in a population of cells can work as the bet-hedging of the cells under an unpredictably changing environment, the typical example of which is the bacterial persistence. To understand the strategy to control such…

Populations and Evolution · Quantitative Biology 2019-12-02 So Nakashima , Yuki Sughiyama , Tetsuya J. Kobayashi

Visualisation facilitates the understanding of scientific data both through exploration and explanation of visualised data. Provenance contributes to the understanding of data by containing the contributing factors behind a result. With the…

Databases · Computer Science 2015-02-06 Bilal Arshad , Kamran Munir , Richard McClatchey , Saad Liaquat

This study addresses the vital role of data analytics in monitoring fertiliser applications in crop cultivation. Inaccurate fertiliser application decisions can lead to costly consequences, hinder food production, and cause environmental…

Machine Learning · Computer Science 2023-10-19 Usama Ikhlaq , Tahar Kechadi

Foundation large language models (LLMs) have shown an impressive ability to solve tasks across a wide range of fields including health. To effectively solve personalized health tasks, LLMs need the ability to ingest a diversity of data…

Reliable seed yield estimation is an indispensable step in plant breeding programs geared towards cultivar development in major row crops. The objective of this study is to develop a machine learning (ML) approach adept at soybean…

We present a specialized procedural model for generating synthetic agricultural scenes, focusing on soybean crops, along with various weeds. This model is capable of simulating distinct growth stages of these plants, diverse soil…

Helix is an open-source, extensible, Python-based software framework to facilitate reproducible and interpretable machine learning workflows for tabular data. It addresses the growing need for transparent experimental data analytics…

Breeding for new crop characteristics and adjusting management practices are critical avenues to mitigate yield loss and maintain yield stability under a changing climate. However, identifying high-performing plant traits and management…

Populations and Evolution · Quantitative Biology 2022-06-09 Jennifer Hsiao , Soo-Hyung Kim , Dennis J. Timlin , Nathaniel D. Mueller , Abigail L. S. Swann

Hierarchical image recognition seeks to predict class labels along a semantic taxonomy, from broad categories to specific ones, typically under the tidy assumption that every training image is fully annotated along its taxonomy path.…

Computer Vision and Pattern Recognition · Computer Science 2026-05-21 Seulki Park , Zilin Wang , Stella X. Yu

The acquisition of large-scale and diverse demonstration data are essential for improving robotic imitation learning generalization. However, generating such data for complex manipulations is challenging in real-world settings. We introduce…

Robotics · Computer Science 2025-03-18 Wensheng Wang , Ning Tan

We introduce a hybrid metaphor for the visualization of the reconciliations of co-phylogenetic trees, that are mappings among the nodes of two trees. The typical application is the visualization of the co-evolution of hosts and parasites in…

Data Structures and Algorithms · Computer Science 2017-09-01 Tiziana Calamoneri , Valentino Di Donato , Diego Mariottini , Maurizio Patrignani

The preservation of soil health is a critical challenge in the 21st century due to its significant impact on agriculture, human health, and biodiversity. We provide the first deep investigation of the predictive potential of machine…

Machine Learning · Statistics 2024-02-20 Rosa Aghdam , Xudong Tang , Shan Shan , Richard Lankau , Claudia Solís-Lemus

This paper addresses the challenge of viewing and navigating Bayesian networks as their structural size and complexity grow. Starting with a review of the state of the art of visualizing Bayesian networks, an area which has largely been…

Artificial Intelligence · Computer Science 2017-07-05 Clifford Champion , Charles Elkan