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The effective visualization of genomic data is crucial for exploring and interpreting complex relationships within and across genes and genomes. Despite advances in developing dedicated bioinformatics software, common visualization tools…
During the training phase of machine learning (ML) models, it is usually necessary to configure several hyperparameters. This process is computationally intensive and requires an extensive search to infer the best hyperparameter set for the…
This paper is an invitation to the process systems engineering community to change the paradigm for process plants. The goal is to achieve much easier convergence while retaining accuracy on par with the rigorous models. Accurate plant…
Plant breeding is fundamentally comprised of three cyclic activities: 1) intermating lines to generate novel allelic combinations, 2) evaluation of new plant cultivars in distinct environments, and 3) selection of superior individuals to be…
Automated identification of plants has improved considerably thanks to the recent progress in deep learning and the availability of training data with more and more photos in the field. However, this profusion of data only concerns a few…
Embedding learning transforms discrete data entities into continuous numerical representations, encoding features/properties of the entities. Despite the outstanding performance reported from different embedding learning algorithms, few…
This paper introduces a novel toolbox named BIDEAL for the generation of biclusters, their analysis, visualization, and validation. The objective is to facilitate researchers to use forefront biclustering algorithms embedded on a single…
In the present work we have selected a collection of statistical and mathematical tools useful for the exploration of multivariate data and we present them in a form that is meant to be particularly accessible to a classically trained…
Network visualization has traditionally relied on heuristic metrics, such as stress, under the assumption that optimizing them leads to aesthetic and informative layouts. However, no single metric consistently produces the most effective…
Large models can play important roles in many domains. Agriculture is another key factor affecting the lives of people around the world. It provides food, fabric, and coal for humanity. However, facing many challenges such as pests and…
Accurate prediction of crop states (e.g., phenology stages and cold hardiness) is essential for timely farm management decisions such as irrigation, fertilization, and canopy management to optimize crop yield and quality. While traditional…
Accurate prediction of crop yield supported by scientific and domain-relevant insights, can help improve agricultural breeding, provide monitoring across diverse climatic conditions and thereby protect against climatic challenges to crop…
Plant disease recognition has witnessed a significant improvement with deep learning in recent years. Although plant disease datasets are essential and many relevant datasets are public available, two fundamental questions exist. First, how…
Several researches in leaf identification did not include color information as features. The main reason is caused by a fact that they used green colored leaves as samples. However, for foliage plants, plants with colorful leaves, fancy…
We present a multi-head vision transformer approach for multi-label plant species prediction in vegetation plot images, addressing the PlantCLEF 2025 challenge. The task involves training models on single-species plant images while testing…
We consider the problem of drawing multiple gene trees inside a single species tree in order to visualize multispecies coalescent trees. Specifically, the drawing of the species tree fills a rectangle in which each of its edges is…
Identification of plant disease is usually done through visual inspection or during laboratory examination which causes delays resulting in yield loss by the time identification is complete. On the other hand, complex deep learning models…
For a global breeding organization, identifying the next generation of superior crops is vital for its success. Recognizing new genetic varieties requires years of in-field testing to gather data about the crop's yield, pest resistance,…
For deep learning practitioners, hyperparameter tuning for optimizing model performance can be a computationally expensive task. Though visualization can help practitioners relate hyperparameter settings to overall model performance,…
Leaf wetness detection is a crucial task in agricultural monitoring, as it directly impacts the prediction and protection of plant diseases. However, existing sensing systems suffer from limitations in robustness, accuracy, and…