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This paper introduces a framework for quantitative characterization of the controllability of time-varying linear systems (or networks) in terms of input novelty. The motivation for such an approach comes from the study of biophysical…

Optimization and Control · Mathematics 2014-11-24 Gautam Kumar , Delsin Menolascino , ShiNung Ching

We study classes of dynamical systems that can be obtained by constructing recursive networks with monotone Boolean functions. Stack filters in nonlinear signal processing are special cases of such systems. We show an analytical connection…

Disordered Systems and Neural Networks · Physics 2009-07-28 Matti Nykter , Juha Kesseli , Ilya Shmulevich

Boolean networks is a well-established formalism for modelling biological systems. A vital challenge for analysing a Boolean network is to identify all the attractors. This becomes more challenging for large asynchronous Boolean networks,…

Molecular Networks · Quantitative Biology 2017-06-14 Andrzej Mizera , Jun Pang , Hongyang Qu , Qixia Yuan

In this paper, we present a class of network topologies under which the Laplacian consensus dynamics exhibits undesirable controllability properties under a broadcast control signal. Specifically, the networks we characterize are…

Optimization and Control · Mathematics 2019-11-18 Cesar O. Aguilar

Boolean networks are discrete dynamical systems where each automaton has its own Boolean function for computing its state according to the configuration of the network. The updating mode then determines how the configuration of the network…

Dynamical Systems · Mathematics 2021-06-30 Loïc Paulevé , Sylvain Sené

In this article, we design the distributed pinning controllers to globally stabilize a Boolean network (BN), specially a sparsely connected large-scale one, towards a preassigned subset of state space through the node-to-node message…

Systems and Control · Electrical Eng. & Systems 2022-03-16 Shiyong Zhu , Jianquan Lu , Liangjie Sun , Jinde Cao

Characterization of the differences between biological and random networks can reveal the design principles that enable the robust realization of crucial biological functions including the establishment of different cell types. Previous…

Molecular Networks · Quantitative Biology 2020-08-26 Shubham Tripathi , David A. Kessler , Herbert Levine

Boolean networks have been successfully used in modelling gene regulatory networks. In this paper we propose a reduction method that reduces the complexity of a Boolean network but keeps dynamical properties and topological features and…

Quantitative Methods · Quantitative Biology 2009-07-06 Alan Veliz-Cuba

Consider a large Boolean network with a feed forward structure. Given a probability distribution on the inputs, can one find, possibly small, collections of input nodes that determine the states of most other nodes in the network? To answer…

Information Theory · Computer Science 2013-05-23 Reinhard Heckel , Steffen Schober , Martin Bossert

Complex network states are characterized by the interplay between system's structure and dynamics. One way to represent such states is by means of network density matrices, whose von Neumann entropy characterizes the number of distinct…

Physics and Society · Physics 2022-12-06 Arsham Ghavasieh , Manlio De Domenico

It has been shown that uniform as well as non-uniform cellular automata (CA) can be evolved to perform certain computational tasks. Random Boolean networks are a generalization of two-state cellular automata, where the interconnection…

Disordered Systems and Neural Networks · Physics 2007-05-23 Bertrand Mesot , Christof Teuscher

Living systems face both environmental complexity and limited access to free-energy resources. Survival under these conditions requires a control system that can activate, or deploy, available perception and action resources in a context…

Neurons and Cognition · Quantitative Biology 2023-03-06 Chris Fields , Filippo Fabrocini , Karl Friston , James F. Glazebrook , Hananel Hazan , Michael Levin , Antonino Marciano

Random Boolean networks (RBNs) are frequently employed for modelling complex systems driven by information processing, e.g. for gene regulatory networks (GRNs). Here we propose a hierarchical adaptive RBN (HARBN) as a system consisting of…

Physics and Society · Physics 2016-03-23 Piotr J. Gorski , Agnieszka Czaplicka , Janusz A. Holyst

In this work, several random Boolean networks (RBN) are generated and analyzed from two characteristics: their time evolution diagram and their transition diagram. For this purpose, its randomness is estimated using three measures, of which…

Information Theory · Computer Science 2024-09-04 Manuel de J. Luevano , Alejandro Puga

The success of deep convolutional neural network (CNN) in computer vision especially image classification problems requests a new information theory for function of image, instead of image itself. In this article, after establishing a deep…

Machine Learning · Computer Science 2017-10-17 Ya-Hui Zhang

Boolean networks, inspired by gene regulatory networks, were developed to understand the complex behaviors observed in biological systems, with network attractors corresponding to biological phenotypes or cell types. In this article, we…

Molecular Networks · Quantitative Biology 2025-11-25 Venkata Sai Narayana Bavisetty , Matthew Wheeler , Reinhard Laubenbacher , Claus Kadelka

Random Boolean networks (RBNs) are models of genetic regulatory networks. It is useful to describe RBNs as self-organizing systems to study how changes in the nodes and connections affect the global network dynamics. This article reviews…

Adaptation and Self-Organizing Systems · Physics 2010-09-24 Carlos Gershenson

Previous work in Boolean dynamical networks has suggested that the number of components that must be controlled to select an existing attractor is typically set by the number of attractors admitted by the dynamics, with no dependence on the…

Molecular Networks · Quantitative Biology 2024-10-11 Bryan C. Daniels , Enrico Borriello

In this paper, we consider the state controllability of networked systems, where the network topology is directed and weighted and the nodes are higher-dimensional linear time-invariant (LTI) dynamical systems. We investigate how the…

Systems and Control · Computer Science 2015-11-03 Lin Wang , Guanrong Chen , Xiaofan Wang , Wallace K. S. Tang

Two general upper bounds on the topological entropy of nonlinear time-varying systems are established: one using the matrix measure of the system Jacobian, the other using the largest real part of the eigenvalues of the Jacobian matrix with…

Optimization and Control · Mathematics 2025-09-18 Guosong Yang , Daniel Liberzon