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A proper vertex of a rooted tree with totally ordered vertices is a vertex that is less than all its proper descendants. We count several kinds of labeled rooted trees and forests by the number of proper vertices. Our results are all…

Combinatorics · Mathematics 2013-04-02 Ira M. Gessel , Seunghyun Seo

Binary trait data record the presence or absence of distinguishing traits in individuals. We treat the problem of estimating ancestral trees with time depth from binary trait data. Simple analysis of such data is problematic. Each homology…

Methodology · Statistics 2009-08-31 Geoff K. Nicholls , Russell D. Gray

The use of machine learning algorithms in finance, medicine, and criminal justice can deeply impact human lives. As a consequence, research into interpretable machine learning has rapidly grown in an attempt to better control and fix…

Machine Learning · Computer Science 2021-02-02 Thibaut Vidal , Toni Pacheco , Maximilian Schiffer

In [Dugan-Glennon-Gunnells-Steingrimsson-2019], the authors introduce tiered trees to define combinatorial objects counting absolutely indecomposable representations of certain quivers, and torus orbits on certain homogeneous varieties. In…

Combinatorics · Mathematics 2023-03-02 Michele D'Adderio , Alessandro Iraci , Yvan LeBorgne , Marino Romero , Anna Vanden Wyngaerd

The number of tree-rooted maps, that is, rooted planar maps with a distinguished spanning tree, of size $n$ is C(n)C(n+1) where C(n)=binomial(2n,n)/(n+1) is the nth Catalan number. We present a (long awaited) simple bijection which explains…

Combinatorics · Mathematics 2009-06-18 Olivier Bernardi

We are interested in the problem of translating between two representations of closure systems, namely implicational bases and meet-irreducible elements. Albeit its importance, the problem is open. Motivated by this problem, we introduce…

Combinatorics · Mathematics 2023-06-16 Lhouari Nourine , Simon Vilmin

We propose a new arithmetic for non-empty rooted unordered trees simply called trees. After discussing tree representation and enumeration, we define the operations of tree addition, multiplication and stretch, prove their properties, and…

Discrete Mathematics · Computer Science 2016-02-02 Fabrizio Luccio

The theme of this article is the algebraic combinatorics of leaf-labeled rooted binary trees and forests of such trees. The structure of a Hopf operad is defined on the vector spaces spanned by forests of leaf-labeled, rooted, binary trees.…

Combinatorics · Mathematics 2007-05-23 Frederic Chapoton

We introduce two operads which own the set of planar forests as a basis. With its usual product and two other products defined by different types of graftings, the algebra of planar rooted trees H becomes an algebra over these operads. The…

Rings and Algebras · Mathematics 2009-01-16 Loïc Foissy

We propose a new approach to extending the notion of commutator and Lie algebra to algebras with ternary multiplication laws. Our approach is based on ternary associativity of the first and second kind. We propose a ternary commutator,…

Rings and Algebras · Mathematics 2024-09-05 Viktor Abramov

A typical decomposition question asks whether the edges of some graph $G$ can be partitioned into disjoint copies of another graph $H$. One of the oldest and best known conjectures in this area, posed by Ringel in 1963, concerns the…

Combinatorics · Mathematics 2020-02-25 Richard Montgomery , Alexey Pokrovskiy , Benny Sudakov

Joint distributions over many variables are frequently modeled by decomposing them into products of simpler, lower-dimensional conditional distributions, such as in sparsely connected Bayesian networks. However, automatically learning such…

Machine Learning · Computer Science 2013-01-07 Scott Davies , Andrew Moore

Working with generating functions, the combinatorics of a recurrence relation can be expressed in a way that allows for more efficient calculation of the quantity. This is true of the Catalan numbers for an ordered binary tree…

Combinatorics · Mathematics 2025-03-05 David Serena , William J Buchanan

We study edge-decompositions of highly connected graphs into copies of a given tree. In particular we attack the following conjecture by Bar\'at and Thomassen: for each tree $T$, there exists a natural number $k_T$ such that if $G$ is a…

Combinatorics · Mathematics 2012-03-09 János Barát , Dániel Gerbner

Pairwise ordered tree alignment are combinatorial objects that appear in RNA secondary structure comparison. However, the usual representation of tree alignments as supertrees is ambiguous, i.e. two distinct supertrees may induce identical…

Quantitative Methods · Quantitative Biology 2016-03-08 Cedric Chauve , Julien Courtiel , Yann Ponty

We consider unicellular maps, or polygon gluings, of fixed genus. A few years ago the first author gave a recursive bijection transforming unicellular maps into trees, explaining the presence of Catalan numbers in counting formulas for…

Combinatorics · Mathematics 2014-03-21 Guillaume Chapuy , Valentin Féray , Eric Fusy

The generating polynomial of permutations of size $n$, counted by the number of alternating runs, has a root at $-1$ of multiplicity $\lfloor (n-2)/2 \rfloor$ for all $n \ge 2$. This result can be derived by combining the David--Barton…

Combinatorics · Mathematics 2025-12-16 Qiongqiong Pan , Yunze Wang , Jiang Zeng

We give a simple algorithm that determines whether a given post-critically finite topological polynomial is Thurston equivalent to a polynomial. If it is, the algorithm produces the Hubbard tree; otherwise, the algorithm produces the…

Dynamical Systems · Mathematics 2021-11-25 James Belk , Justin Lanier , Dan Margalit , Rebecca R. Winarski

Recently proposed budding tree is a decision tree algorithm in which every node is part internal node and part leaf. This allows representing every decision tree in a continuous parameter space, and therefore a budding tree can be jointly…

Machine Learning · Computer Science 2014-12-22 Ozan İrsoy , Ethem Alpaydın

Starting from the data of an arbor, which is a rooted tree with vertices decorated by disjoint sets, we introduce a lattice polytope and a partial order on its lattice points. We give recursive algorithms for various classical invariants of…

Combinatorics · Mathematics 2025-08-26 Frédéric Chapoton
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