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The hierarchical and recursive expressive capability of rooted trees is applicable to represent statistical models in various areas, such as data compression, image processing, and machine learning. On the other hand, such hierarchical…

Machine Learning · Computer Science 2022-01-25 Yuta Nakahara , Shota Saito , Akira Kamatsuka , Toshiyasu Matsushima

Recently, considerable effort has been put into developing fast algorithms to reconstruct a rooted phylogenetic network that explains two rooted phylogenetic trees and has a minimum number of hybridization vertices. With the standard…

Populations and Evolution · Quantitative Biology 2011-09-16 Celine Scornavacca , Simone Linz , Benjamin Albrecht

For a labeled tree on the vertex set $\set{1,2,\ldots,n}$, the local direction of each edge $(i\,j)$ is from $i$ to $j$ if $i<j$. For a rooted tree, there is also a natural global direction of edges towards the root. The number of edges…

Combinatorics · Mathematics 2022-03-22 Heesung Shin , Jiang Zeng

We develop a canonical pairing between trees and graphs, which passes to their quotients by Jacobi identities. This pairing is an effective and simple tool for understanding the Lie and Poisson operads, providing canonical duals. In the…

Quantum Algebra · Mathematics 2007-05-23 Dev P. Sinha

In the context of reconstructing phylogenetic networks from a collection of phylogenetic trees, several characterisations and subsequently algorithms have been established to reconstruct a phylogenetic network that collectively embeds all…

Combinatorics · Mathematics 2023-08-21 Janosch Döcker , Simone Linz , Charles Semple

Recognizing handwritten mathematics is a challenging classification problem, requiring simultaneous identification of all the symbols comprising an input as well as the complex two-dimensional relationships between symbols and…

Artificial Intelligence · Computer Science 2014-09-19 Scott MacLean , George Labahn

We study Hall-Littlewood polynomials using an integrable lattice model of $t$-deformed bosons. Working with row-to-row transfer matrices, we review the construction of Hall-Littlewood polynomials (of the $A_n$ root system) within the…

Mathematical Physics · Physics 2016-06-15 Michael Wheeler , Paul Zinn-Justin

We provide a bijection between the set of factorizations, that is, ordered (n-1)-tuples of transpositions in ${\mathcal S}_{n}$ whose product is (12...n), and labelled trees on $n$ vertices. We prove a refinement of a theorem of D\'{e}nes…

Combinatorics · Mathematics 2016-09-07 Ian Goulden , Alexander Yong

A famous conjecture of Stanley states that his chromatic symmetric function distinguishes trees. As a quasisymmetric analogue, we conjecture that the chromatic quasisymmetric function of Shareshian and Wachs and of Ellzey distinguishes…

Combinatorics · Mathematics 2024-12-09 Jean-Christophe Aval , Karimatou Djenabou , Peter R. W. McNamara

Phylogenetic trees are binary nonplanar trees with labelled leaves, and plane oriented recursive trees are planar trees with an increasing labelling. Both families are enumerated by double factorials. A bijection is constructed, using the…

Combinatorics · Mathematics 2017-09-19 Helmut Prodinger

Motivated by the properties of the descent polynomials, which enumerate permutations of $S_n$ with a fixed descent set, we define descent polynomials for labeled rooted trees. We give recursive and explicit formulas for these polynomials…

Combinatorics · Mathematics 2023-05-02 Svetlana Poznanović , Maria Rodriguez Hertz , Solomon Valore-Caplan , David Wichmann

In this work, we give combinatorial proofs for generating functions of two problems, i.e., flushed partitions and concave compositions of even length. We also give combinatorial interpretation of one problem posed by Sylvester involving…

Combinatorics · Mathematics 2011-12-13 Xiaochuan Liu

The tangent number $T_{2n+1}$ is equal to the number of increasing labelled complete binary trees with $2n+1$ vertices. This combinatorial interpretation immediately proves that $T_{2n+1}$ is divisible by $2^n$. However, a stronger…

Combinatorics · Mathematics 2018-02-28 Guo-Niu Han , Jing-Yi Liu

The modular decomposition of a symmetric map $\delta\colon X\times X \to \Upsilon$ (or, equivalently, a set of symmetric binary relations, a 2-structure, or an edge-colored undirected graph) is a natural construction to capture key features…

Combinatorics · Mathematics 2021-03-12 Carmen Bruckmann , Peter F. Stadler , Marc Hellmuth

We present a proof of a combinatorial conjecture from the second author's Ph.D. thesis. The proof relies on binomial and multinomial sums identities. We also discuss the relevance of the conjecture in the context of PAC-Bayesian machine…

Machine Learning · Statistics 2020-06-08 M. Younsi , A. Lacasse

We study an abstract notion of tree structure which lies at the common core of various tree-like discrete structures commonly used in combinatorics: trees in graphs, order trees, nested subsets of a set, tree-decompositions of graphs and…

Combinatorics · Mathematics 2017-02-28 Reinhard Diestel

Rooted tree maps assign to an element of the Connes-Kreimer Hopf algebra of rooted trees a linear map on the noncommutative polynomial algebra in two letters. Evaluated at any admissible word these maps induce linear relations between…

Number Theory · Mathematics 2017-12-06 Henrik Bachmann , Tatsushi Tanaka

Reduction trees are a way of encoding a substitution procedure dictated by the relations of an algebra. We use reduction trees in the subdivision algebra to construct canonical triangulations of flow polytopes which are shellable. We…

Combinatorics · Mathematics 2015-02-16 Karola Mészáros

This work builds on the notion of record of rooted trees. We provide an alternative definition of parking functions, derive from it a record-preserving bijection between rooted trees and parking functions, and establish a join…

Combinatorics · Mathematics 2026-03-31 Adrián Lillo , Mercedes Rosas , Stefan Trandafir

We present a bijection from planar reduced trees to planar rooted hypertrees, which extends Knuth's rotation correspondence between planar binary trees and planar rooted trees. The operadic counterpart of the new bijection is explained.…

Combinatorics · Mathematics 2019-04-09 Kurusch Ebrahimi-Fard , Dominique Manchon