Related papers: Decomposition of Triply Rooted Trees
Graph polynomials encode fundamental combinatorial invariants of graphs. Their computation is investigated using tree and path decomposition frameworks, with formal definitions of treewidth, k-trees, and pathwidth establishing the…
Inference of species networks from genomic data under the Network Multispecies Coalescent Model is currently severely limited by heavy computational demands. It also remains unclear how complicated networks can be for consistent inference…
The classical Matrix-Tree Theorem allows one to list the spanning trees of a graph by monomials in the expansion of the determinant of a certain matrix. We prove that in the case of three-graphs (that is, hypergraphs whose edges have…
Cayley's formula states that the number of labelled trees on $n$ vertices is $n^{n-2}$, and many of the current proofs involve complex structures or rigorous computation. We present a bijective proof of the formula by providing an…
The integrand of any multi-loop integral is characterised after Feynman parametrisation by two polynomials. In this review we summarise the properties of these polynomials. Topics covered in this article include among others: Spanning trees…
We define Leibniz triple systems in a functorial manner using the algorithm of Kolesnikov and Pozhidaev which converts identities for algebras into identities for dialgebras. We verify that Leibniz triple systems are the natural analogues…
In evolutionary biology, phylogenetic trees are commonly inferred from a set of characters (partitions) of a collection of biological entities (e.g., species or individuals in a population). Such characters naturally arise from molecular…
This paper deals with computation trees over an arbitrary structure consisting of a set along with collections of functions and predicates that are defined on it. It is devoted to the comparative analysis of three parameters of problems…
We show that the genealogy of any self-similar fragmentation process can be encoded in a compact measured real tree. Under some Malthusian hypotheses, we compute the fractal Hausdorff dimension of this tree through the use of a natural…
We prove that every graph has a canonical tree of tree-decompositions that distinguishes all principal tangles (these include the ends and various kinds of large finite dense structures) efficiently. Here `trees of tree-decompositions' are…
The operation of binary intermolecular recombination, originating in the theory of DNA computing, permits a natural generalization to n-ary operations which perform simultaneous recombination of n molecules. In the case n = 3, we use…
We give a novel combinatorial interpretation to the perturbative series solutions for a class of Dyson-Schwinger equations. We show how binary tubings of rooted trees with labels from an alphabet on the tubes, and where the labels satisfy…
There exist several methods dealing with the reconstruction of rooted phylogenetic networks explaining different evolutionary histories given by rooted binary phylogenetic trees. In practice, however, due to insufficient information of the…
Jones conjectures the arboreal representation of a degree two rational map will have finite index in the full automorphism group of a binary rooted tree except under certain conditions. We prove a version of Jones' Conjecture for quadratic…
It is a known fact that, given two rooted binary phylogenetic trees, the concept of maximum acyclic agreement forests is sufficient to compute hybridization networks with minimum hybridization number. In this work, we demonstrate by first…
Using Machine Learning systems in the real world can often be problematic, with inexplicable black-box models, the assumed certainty of imperfect measurements, or providing a single classification instead of a probability distribution. This…
Phylogenetics uses alignments of molecular sequence data to learn about evolutionary trees. Substitutions in sequences are modelled through a continuous-time Markov process, characterised by an instantaneous rate matrix, which standard…
The dual of a map is a fundamental construction on combinatorial maps, but many other combinatorial objects also possess their notion of duality. For instance, the Tamari lattice is isomorphic to its order dual, which induces an involution…
In the critical beta-splitting model of a random $n$-leaf rooted tree, clades are recursively split into sub-clades, and a clade of $m$ leaves is split into sub-clades containing $i$ and $m-i$ leaves with probabilities $\propto 1/(i(m-i))$.…
We give a short proof of Cayley's tree formula for counting the number of different labeled trees on $n$ vertices. The following nonlinear recursive relation for the number of labeled trees on $n$ vertices is deduced from a combinatorial…