Related papers: On Two Graph-Theoretic Characterizations of Tree C…
It is known that any chordal graph on $n$ vertices can be represented as the intersection of $n$ subtrees in a tree on $n$ nodes. This fact is recently used in [2] to generate random chordal graphs on $n$ vertices by generating $n$ subtrees…
Graph packing and partitioning problems have been studied in many contexts, including from the algorithmic complexity perspective. Consider the packing problem of determining whether a graph contains a spanning tree and a cycle that do not…
Popular matchings provide a model of matching under preferences in which a solution corresponds to a Condorcet winner in voting systems. In a bipartite graph in which the vertices have preferences over their neighbours, a matching is…
In this paper, we investigate the problem of generating the spanning trees of a graph $G$ up to the automorphisms or "symmetries" of $G$. After introducing and surveying this problem for general input graphs, we present algorithms that…
In previous work, we defined the intersection graph of a chord diagram associated with a string link (as in the theory of finite type invariants). In this paper, we look at the case when this graph is a tree, and we show that in many cases…
Topological structures such as the merge tree provide an abstract and succinct representation of scalar fields. They facilitate effective visualization and interactive exploration of feature-rich data. A merge tree captures the topology of…
We compare the phylogenetic tensors for various trees and networks for two, three and four taxa. If the probability spaces between one tree or network and another are not identical then there will be phylogenetic tensors that could have…
A graph $G$ is called a pairwise compatibility graph (PCG) if there exists an edge-weighted tree $T$ and two non-negative real numbers $d_{min}$ and $d_{max}$ such that each leaf $l_u$ of $T$ corresponds to a vertex $u \in V$ and there is…
We investigate exact crossing minimization for graphs that differ from trees by a small number of additional edges, for several variants of the crossing minimization problem. In particular, we provide fixed parameter tractable algorithms…
The availability of graph data with node attributes that can be either discrete or real-valued is constantly increasing. While existing kernel methods are effective techniques for dealing with graphs having discrete node labels, their…
A temporal graph is a graph in which edges are assigned a time label. Two nodes u and v of a temporal graph are connected one to the other if there exists a path from u to v with increasing edge time labels. We consider the problem of…
A graph is locally chordal if each of its small-radius balls is chordal. In an earlier work [AKK25], the authors and Kobler proved that locally chordal graphs can be characterized by having chordal local covers, by forbidding short cycles…
Slimness of a graph measures the local deviation of its metric from a tree metric. In a graph $G=(V,E)$, a geodesic triangle $\bigtriangleup(x,y,z)$ with $x, y, z\in V$ is the union $P(x,y) \cup P(x,z) \cup P(y,z)$ of three shortest paths…
A tree $t$-spanner of a graph $G$ is a spanning tree of $G$ such that the distance between pairs of vertices in the tree is at most $t$ times their distance in $G$. Deciding tree $t$-spanner admissible graphs has been proved to be tractable…
The most elusive problem around the class of circular-arc graphs is identifying all minimal graphs that are not in this class. The main obstacle is the lack of a systematic way of enumerating these minimal graphs. McConnell [FOCS 2001]…
We consider locally checkable labeling LCL problems in the LOCAL model of distributed computing. Since 2016, there has been a substantial body of work examining the possible complexities of LCL problems. For example, it has been established…
The AHU-algorithm solves the computationally difficult graph isomorphism problem for rooted trees, and does so with a linear time complexity. Although the AHU-algorithm has remained state of the art for almost 50 years, it has been…
Recent investigations in computational biology focus on a family of 2-colored digraphs, called 2-colored best match graphs, which naturally arise from rooted phylogenetic trees. Actually the defining properties of such graphs are…
We consider the following basic problem in phylogenetic tree construction. Let $\mathcal{P} = \{T_1, \ldots, T_k\}$ be a collection of rooted phylogenetic trees over various subsets of a set of species. The tree compatibility problem asks…
A digraph is connected-homogeneous if any isomorphism between finite connected induced subdigraphs extends to an automorphism of the digraph. We consider locally-finite connected-homogeneous digraphs with more than one end. In the case that…