Related papers: On Two Graph-Theoretic Characterizations of Tree C…
Graph connectivity and network design problems are among the most fundamental problems in combinatorial optimization. The minimum spanning tree problem, the two edge-connected spanning subgraph problem (2-ECSS) and the tree augmentation…
The families EPT (resp. EPG) Edge Intersection Graphs of Paths in a tree (resp. in a grid) are well studied graph classes. Recently we introduced the graph classes Edge-Intersecting and Non-Splitting Paths in a Tree ENPT, and in a Grid…
In phylogenetics, tree-based networks are used to model and visualize the evolutionary history of species where reticulate events such as horizontal gene transfer have occurred. Formally, a tree-based network $N$ consists of a phylogenetic…
This paper studies constructive heuristics for the minimum labelling spanning tree (MLST) problem. The purpose is to find a spanning tree that uses edges that are as similar as possible. Given an undirected labeled connected graph (i.e.,…
We prove that the (divisorial) gonality of a finite connected graph is lower bounded by its treewidth. We show that equality holds for grid graphs and complete multipartite graphs. We prove that the treewidth lower bound also holds for…
THIS IS A CORRECTED VERSION INCLUDING AN APPENDED CORRIGENDUM. Best match graphs arise naturally as the first processing intermediate in algorithms for orthology detection. Let $T$ be a phylogenetic (gene) tree $T$ and $\sigma$ an…
Motivated by alignment of correlated sparse random graphs, we introduce a hypothesis testing problem of deciding whether or not two random trees are correlated. We obtain sufficient conditions under which this testing is impossible or…
In this draft we prove an interesting structural property related to the problem of computing {\em all the best swap edges} of a {\em tree spanner} in unweighted graphs. Previous papers show that the maximum stretch factor of the tree where…
We define the crossing graph of a given embedded graph (such as a road network) to be a graph with a vertex for each edge of the embedding, with two crossing graph vertices adjacent when the corresponding two edges of the embedding cross…
Tree representations of (sets of) symmetric binary relations, or equivalently edge-colored undirected graphs, are of central interest, e.g.\ in phylogenomics. In this context symbolic ultrametrics play a crucial role. Symbolic ultrametrics…
Graham and Sloane proposed in 1980 a conjecture stating that every tree has a harmonious labelling, a graph labelling closely related to additive base. Very limited results on this conjecture are known. In this paper, we proposed a…
For a given graph consider a pair of disjoint matchings the union of which contains as many edges as possible. Furthermore, consider the relation of the cardinalities of a maximum matching and the largest matching in those pairs. It is…
Graph canonization is the problem of computing a unique representative, a canon, from the isomorphism class of a given graph. This implies that two graphs are isomorphic exactly if their canons are equal. We show that graphs of bounded tree…
Trees with labelled leaves and with all other vertices of degree three play an important role in systematic biology and other areas of classification. A classical combinatorial result ensures that such trees can be uniquely reconstructed…
A geophylogeny is a phylogenetic tree (or dendrogram) where each leaf (e.g. biological taxon) has an associated geographic location (site). To clearly visualize a geophylogeny, the tree is typically represented as a crossing-free drawing…
The geometric dual of a cellularly embedded graph is a fundamental concept in graph theory and also appears in many other branches of mathematics. The partial dual is an essential generalization which can be obtained by forming the…
Orthology and paralogy relations are often inferred by methods based on gene similarity, which usually yield a graph depicting the relationships between gene pairs. Such relation graphs are known to frequently contain errors, as they cannot…
One of the major results of [N. Robertson and P. D. Seymour. Graph minors. XIII. The disjoint paths problem. J. Combin. Theory Ser. B, 63(1):65--110, 1995], also known as the weak structure theorem, revealed the local structure of graphs…
Many standard graph classes are known to be characterized by means of layouts (a permutation of its vertices) excluding some patterns. Important such graph classes are among others: proper interval graphs, interval graphs, chordal graphs,…
The phylogenetic tree construction is to infer the evolutionary relationship between species from the experimental data. However, the experimental data are often imperfect and conflicting each others. Therefore, it is important to extract…