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Materials science is becoming increasingly more reliant on digital data to facilitate progress in the field. Due to a large diversity in its scope, breadth, and depth, organizing the data in a standard way to optimize the speed and creative…

Materials Science · Physics 2019-03-01 Timur Bazhirov

Scientists today collect, analyze, and generate TeraBytes and PetaBytes of data. These data are often shared and further processed and analyzed among collaborators. In order to facilitate sharing and data interpretations, data need to carry…

Instrumentation and Methods for Astrophysics · Physics 2010-05-18 Ewa Deelman , Bruce Berriman , Ann Chervenak , Oscar Corcho , Paul Groth , Luc Moreau

The LHCb collaboration is one of the four major experiments at the Large Hadron Collider at CERN. Many petabytes of data are produced by the detectors and Monte-Carlo simulations. The LHCb Grid interware LHCbDIRAC is used to make data…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-12-06 Mikhail Hushchyn , Andrey Ustyuzhanin , Philippe Charpentier , Christophe Haen

Single-cell RNA-Sequencing (scRNA-Seq) has undergone major technological advances in recent years, enabling the conception of various organism-level cell atlassing projects. With increasing numbers of datasets being deposited in public…

The Dynamic PicoProbe at Argonne National Laboratory is undergoing upgrades that will enable it to produce up to 100s of GB of data per day. While this data is highly important for both fundamental science and industrial applications, there…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-08-29 Alexander Brace , Rafael Vescovi , Ryan Chard , Nickolaus D. Saint , Arvind Ramanathan , Nestor J. Zaluzec , Ian Foster

This paper presents the LoRaWAN at the Edge Dataset (LoED), an open LoRaWAN packet dataset collected at gateways. Real-world LoRaWAN datasets are important for repeatable sensor-network and communications research and evaluation as, if…

Networking and Internet Architecture · Computer Science 2020-10-28 Laksh Bhatia , Michael Breza , Ramona Marfievici , Julie A. McCann

The Center for Expanded Data Annotation and Retrieval (CEDAR) aims to revolutionize the way that metadata describing scientific experiments are authored. The software we have developed--the CEDAR Workbench--is a suite of Web-based tools and…

Living systems are often described utilizing informational analogies. An important open question is whether information is merely a useful conceptual metaphor, or intrinsic to the operation of biological systems. To address this question,…

Molecular Networks · Quantitative Biology 2015-08-19 Hyunju Kim , Paul Davies , Sara Imari Walker

Large language models (LLMs) have demonstrated remarkable advancements, primarily due to their capabilities in modeling the hidden relationships within text sequences. This innovation presents a unique opportunity in the field of life…

Genomics · Quantitative Biology 2024-12-25 Cong Li , Qingqing Long , Yuanchun Zhou , Meng Xiao

Scientific research is highly structured and some of that structure is reflected in research reports. Traditional scientific research reports are yielding to interactive documents which expose their internal structure and are richly linked…

Digital Libraries · Computer Science 2012-09-04 Robert B. Allen

During the production, distribution, and consumption of energy, a large quantity of data is generated. For efficiently using of energy resources other supplementary data such as building information, weather, and environmental data etc. are…

Computers and Society · Computer Science 2019-10-22 Muhammad Aslam Jarwar , Sajjad Ali , Ilyoung Chong

Public funding plays a central role in driving scientific discovery. To better understand the link between research inputs and outputs, we introduce FIND (Funding-Impact NSF Database), an open-access dataset that systematically links NSF…

Digital Libraries · Computer Science 2025-10-14 Kazimier Smith , Yucheng Lu , Qiaochu Fan

Rapidly growing public gene expression databases contain a wealth of data for building an unprecedentedly detailed picture of human biology and disease. This data comes from many diverse measurement platforms that make integrating it all…

Genomics · Quantitative Biology 2014-10-16 Karolis Uziela , Antti Honkela

The field of single-cell biology is growing rapidly and is generating large amounts of data from a variety of species, disease conditions, tissues, and organs. Coordinated efforts such as CZI CELLxGENE, HuBMAP, Broad Institute Single Cell…

At this moment, databanks worldwide contain brain images of previously unimaginable numbers. Combined with developments in data science, these massive data provide the potential to better understand the genetic underpinnings of brain…

Machine Learning · Statistics 2025-01-30 Santiago Silva , Boris Gutman , Eduardo Romero , Paul M Thompson , Andre Altmann , Marco Lorenzi

Scientific data governance should prioritize maximizing the utility of data throughout the research lifecycle. Research software systems that enable analysis reproducibility inform data governance policies and assist administrators in…

Many disciplines pose natural-language research questions over large document collections whose answers typically require structured evidence, traditionally obtained by manually designing an annotation schema and exhaustively labeling the…

Computation and Language · Computer Science 2026-04-13 Shahar Levy , Eliya Habba , Reshef Mintz , Barak Raveh , Renana Keydar , Gabriel Stanovsky

RDF data in the linked open data (LOD) cloud is very valuable for many different applications. In order to unlock the full value of this data, users should be able to issue complex queries on the RDF datasets in the LOD cloud. SPARQL can…

Databases · Computer Science 2018-09-14 Ahmed El-Roby , Khaled Ammar , Ashraf Aboulnaga , Jimmy Lin

Open-source software (OSS) plays a vital role in the modern software ecosystem. However, the maintenance and sustainability of OSS projects can be challenging. In this paper, we present the CrOSSD project, which aims to build a database of…

Software Engineering · Computer Science 2023-05-03 Tobias Dam , Lukas Daniel Klausner , Sebastian Neumaier

Using unlabeled wild data containing both in-distribution (ID) and out-of-distribution (OOD) data to improve the safety and reliability of models has recently received increasing attention. Existing methods either design customized losses…

Machine Learning · Computer Science 2025-05-20 Chuanxing Geng , Qifei Li , Xinrui Wang , Dong Liang , Songcan Chen , Pong C. Yuen
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