Related papers: Publishing Life Science Data as Linked Open Data: …
In many academic disciplines, software is created during the research process or for a research purpose. The crucial role of software for research is increasingly acknowledged. The application of software engineering to research software…
The Testbed for LISA Analysis (TLA) Project aims to facilitate the development, validation and comparison of different methods for LISA science data analysis, by the broad LISA Science Community, to meet the special challenges that LISA…
Application developers, in our experience, tend to hesitate when dealing with linked data technologies. To reduce their initial hurdle and enable rapid prototyping, we propose in this paper a framework for building linked data applications.…
High-quality data has become increasingly important to software engineers in designing and implementing today's software, for example, as an input to machine-learning algorithms and visualisation- and analytics-based features. Open data -…
Data of practical interest - such as personal records, transaction logs, and medical histories - are sequential collections of events relevant to a particular source entity. Recent studies have attempted to link sequences that represent a…
Background, enhancing interoperability of bioinformatics knowledge bases is a high priority requirement to maximize data reusability, and thus increase their utility such as the return on investment for biomedical research. A knowledge base…
The scientific enterprise depends critically on the preservation of and open access to published data. This basic tenet applies acutely to phylogenies (estimates of evolutionary relationships among species). Increasingly, phylogenies are…
By combining metal nodes with organic linkers we can potentially synthesize millions of possible metal organic frameworks (MOFs). At present, we have libraries of over ten thousand synthesized materials and millions of in-silico predicted…
Biologists are increasingly using databases for storing and managing their data. Biological databases typically consist of a mixture of raw data, metadata, sequences, annotations, and related data obtained from various sources. Current…
Numerous metascience studies and other initiatives have begun to monitor the prevalence of open science practices when it is more important to understand the 'downstream' effects or impacts of open science. PLOS and DataSeer have developed…
The metadata about scientific experiments published in online repositories have been shown to suffer from a high degree of representational heterogeneity---there are often many ways to represent the same type of information, such as a…
Nature has inspired various ground-breaking technological developments in applications ranging from robotics to aerospace engineering and the manufacturing of medical devices. However, accessing the information captured in scientific…
This study argues that metadata of library catalogs can stand autonomously, providing valuable information detached from the resources they point to and, therefore, could be used as data in the context of the Semantic Web. We present an…
Extracting relations from scientific literature is a fundamental task in biomedical NLP because entities and relations among them drive hypothesis generation and knowledge discovery. As literature grows rapidly, relation extraction (RE) is…
We have established an RNA Mapping Database (RMDB) to enable a new generation of structural, thermodynamic, and kinetic studies from quantitative single-nucleotide-resolution RNA structure mapping (freely available at…
Biologists study Diatoms, a fundamental algae, to assess the health of aquatic systems. Diatom specimens have traditionally been preserved on analog slides, where a single slide can contain thousands of these microscopic organisms.…
Ensuring the trustworthiness and long-term verifiability of scientific data is a foundational challenge in the era of data-intensive, collaborative research. Provenance metadata plays a key role in this context, capturing the origin,…
Open Science is a recurrent topic in scientific discussion, and there is a current effort to make research more accessible to a broader audience. A focus on delivering research findings that are reproducible, or even re-usable has been…
The question-answering system for Life science research, which is characterized by the rapid pace of discovery, evolving insights, and complex interactions among knowledge entities, presents unique challenges in maintaining a comprehensive…
A novel linking mechanism has been described previously [4] that can be used to autonomously link sources that provide related answers to queries executed over an information network. The test query platform has now been re-written…