Related papers: Publishing Life Science Data as Linked Open Data: …
This paper examines how a "Distributed Heterogeneous Relational Data Warehouse" can be integrated in a Grid environment that will provide physicists with efficient access to large and small object collections drawn from databases at…
In the last couple of years, the role of Open Access (OA) publishing has become central in science management and research policy. In the UK and the Netherlands, national OA mandates require the scientific community to seriously consider…
This chapter presents the potential of interoperability and standardised data publication for cultural heritage resources, with a focus on community-driven approaches and web standards for usability. The Linked Open Usable Data (LOUD)…
Delivering effective data analytics is of crucial importance to the interpretation of the multitude of biological datasets currently generated by an ever increasing number of high throughput techniques. Logic programming has much to offer…
Software systems are increasingly depending on data, particularly with the rising use of machine learning, and developers are looking for new sources of data. Open Data Ecosystems (ODE) is an emerging concept for data sharing under public…
We present an introduction to RNA databases. The history and technology behind RNA databases is briefly discussed. We examine differing methods of data collection and curation, and discuss their impact on both the scope and accuracy of the…
Open Relation Extraction (OpenRE) seeks to identify and extract novel relational facts between named entities from unlabeled data without pre-defined relation schemas. Traditional OpenRE methods typically assume that the unlabeled data…
Provenance, or information about the origin or derivation of data, is important for assessing the trustworthiness of data and identifying and correcting mistakes. Most prior implementations of data provenance have involved heavyweight…
A data model specifies how real-world entities and their relationships are represented and operated. In the NoSQL world data modeling usually begins from identifying application queries and designing the data model to efficiently answer…
Cheap high-throughput DNA sequencing may soon become routine not only for human genomes but also for practically anything requiring the identification of living organisms from their DNA: tracking of infectious agents, control of food…
The Genome Warehouse (GWH), accessible at https://ngdc.cncb.ac.cn/gwh, is an extensively utilized public repository dedicated to the deposition, management and sharing of genome assembly sequences, annotations, and metadata. This paper…
This paper presents ForestQB, a SPARQL query builder, to assist Bioscience and Wildlife Researchers in accessing Linked-Data. As they are unfamiliar with the Semantic Web and the data ontologies, ForestQB aims to empower them to benefit…
Every research project necessitates data, often requiring sharing and collaborative review within a team. However, there is a dearth of good open-source data sharing and reviewing services. Existing file-sharing services generally mandate…
Today's sequencing technology allows sequencing an individual genome within a few weeks for a fraction of the costs of the original Human Genome project. Genomics labs are faced with dozens of TB of data per week that have to be…
Systematic Literature Reviews (SLRs) play an important role in the Evidence-Based Software Engineering scenario. With the advance of the computer science field and the growth of research publications, new evidence continuously arises. This…
Many sciences have made significant breakthroughs by adopting online tools that help organize, structure and mine information that is too detailed to be printed in journals. In this paper, we introduce OpenML, a place for machine learning…
Supervised machine learning (ML) is used extensively in biology and deserves closer scrutiny. The DOME recommendations aim to enhance the validation and reproducibility of ML research by establishing standards for key aspects such as data…
We introduce the RIKEN Microstructural Imaging Metadatabase, a semantic web-based imaging database in which image metadata are described using the Resource Description Framework (RDF) and detailed biological properties observed in the…
This thesis investigates in the use of access log data as a source of information for identifying related scientific papers. This is done for arXiv.org, the authority for publication of e-prints in several fields of physics. Compared to…
At the very beginning of compiling a bibliography, usually only basic information, such as title, authors and publication date of an item are known. In order to gather additional information about a specific item, one typically has to…