Related papers: Lattice Knots in a Slab
Given a thin strip of paper, tie a knot, connect the ends, and flatten into the plane. This is a physical model of a folded ribbon knot in the plane, first introduced by Louis Kauffman. We study the folded ribbonlength of these folded…
We give a simple example showing that a knot or link diagram that lies in the ${\mathbb{Z}}^2$ lattice is not necessarily the projection of a lattice stick knot or link in the ${\mathbb{Z}}^3$ lattice, and we give a necessary and sufficient…
The interplay of topological constraints, excluded volume interactions, persistence length and dynamical entanglement length in solutions and melts of linear chains and ring polymers is investigated by means of kinetic Monte Carlo…
We construct a tractable model to describe the rate at which a knotted polymer is ejected from a spherical capsid via a small pore. Knots are too large to fit through the pore and must reptate to the end of the polymer for ejection to…
This paper details a series of experiments in searching for minimal energy configurations for knots and links using the computer program KnotPlot. The most interesting phenomena found in these experiments is the dependence of the…
The mechanical resistance of a polyethylene strand subject to tension and the way its properties are affected by the presence of a knot is studied using first-principles molecular dynamics calculations. The distribution of strain energy for…
We investigate the effects of topological constraints (entanglements) on two dimensional polymer loops in the dense phase, and at the collapse transition (Theta point). Previous studies have shown that in the dilute phase the entangled…
We study the dynamics of a knot in a semiflexible polymer confined to a narrow channel of width comparable to the polymers' persistence length. Using a combination of Brownian dynamics simulations and a coarse-grained stochastic model, we…
Twisted torus knots and links are given by twisting adjacent strands of a torus link. They are geometrically simple and contain many examples of the smallest volume hyperbolic knots. Many are also Lorenz links. We study the geometry of…
We give a new combinatorial proof for the number of convex polyominoes whose minimum enclosing rectangle has given dimensions. We also count the subclass of these polyominoes that contain the lower left corner of the enclosing rectangle…
We employ computer simulations and thermodynamic integration to analyse the effects of bending rigidity and slit confinement on the free energy cost of tying knots, $\Delta F_{\rm knotting}$, on polymer chains under tension. A…
We study the splitting of regular square lattices subject to stochastic intermittent flows. Various flow patterns are produced by different groupings of the nodes, based on their random alternation between two possible states. The resulting…
We generalize lattice models of brittle fracture to arbitrary nonlinear force laws and study the existence of arrested semi-infinite cracks. Unlike what is seen in the discontinuous case studied to date, the range in driving displacement…
We study the thermodynamic properties of a semiflexible polymer confined inside strips of widths L<=9 defined on a square lattice. The polymer is modeled as a self-avoiding walk and a short range interaction between the monomers and the…
In this paper, we determine geometric information on slope lengths of a large class of knots in the 3-sphere, based only on diagrammatical properties of the knots. In particular, we show such knots have meridian length strictly less than 4,…
In "Width complexes for knots and 3-manifolds," Jennifer Schultens defines the width complex for a knot in order to understand the different positions a knot can occupy in the 3-sphere and the isotopies between these positions. She poses…
The cubic lattice stick index of a knot type is the least number of sticks necessary to construct the knot type in the 3-dimensional cubic lattice. We present the cubic lattice stick index of various knots and links, including all…
We give upper bounds on the minimal degree of a model in $\mathbb{P}^2$ and the minimal bidegree of a model in $\mathbb{P}^1 \times \mathbb{P}^1$ of the curve defined by a given Laurent polynomial, in terms of the combinatorics of the…
A ring polymer in a confining space may exhibit at least two phases, namely an expanded (or solvent-rich phase) if its concentration is small, or a collapsed (or polymer-rich phase) when it is concentrated and compressed. These phases are…
Using a two dimensional lattice model we investigate the crack growth under the influence of remote tensile forces as well as due to an internally applied pressure (hydraulic fracturing). For homogeneous elastic properties we present…