Related papers: Lattice Knots in a Slab
We study a model of two polymers confined to a slit with sticky walls. More precisely, we find and analyse the exact solution of two directed friendly walks in such a geometry on the square lattice. We compare the infinite slit limit, in…
The existence of stable links and knots is demonstrated in three-dimensional, bistable, chemical media. The reaction-diffusion medium segregates into regions of high and low concentration separated by sharp interfaces. The interfaces repel…
A {\it stuck knot} is a knot diagram containing designated crossings, called {\it stuck crossings}, whose incident strands are required to remain locally non-separable. These rigidity constraints restrict the allowable ambient isotopies and…
The entropic force exerted by the Brownian fluctuations of a grafted semiflexible polymer upon a rigid smooth wall are calculated both analytically and by Monte Carlo simulations. Such forces are thought to play an important role for…
The interplay of topological constraints and Coulomb interactions in static and dynamic properties of charged polymers is investigated by numerical simulations and scaling arguments. In the absence of screening, the long-range interaction…
Semiflexible polymers are widely used as a paradigm for understanding structural phases in biomolecules including folding of proteins. Here, we compare bead-spring and bead-stick variants of coarse-grained semiflexible polymer models that…
In this note, we attempt to find counterexamples to the conjecture that the ideal form of a knot, that which minimizes its contour length while respecting a no-overlap constraint, also minimizes the volume of the knot, as determined by its…
We study Kauffman's model of folded ribbon knots: knots made of a thin strip of paper folded flat in the plane. The folded ribbonlength is the length to width ratio of such a folded ribbon knot. The folded ribbon knot is also a framed knot,…
We investigate the probability for appearance of knots in self-avoiding loops (SALs) on a cubic lattice. A set of N-step loops is generated by attempting to combine pairs of (N/2)-step self-avoiding walks constructed by a dimerization…
We study the formation of knots on a macroscopic ball-chain, which is shaken on a horizontal plate at 12 times the acceleration of gravity. We find that above a certain critical length, the knotting probability is independent of chain…
The knotting probability is defined by the probability with which an $N$-step self-avoiding polygon (SAP) with a fixed type of knot appears in the configuration space. We evaluate these probabilities for some knot types on a simple cubic…
Using exact enumerations of self-avoiding walks (SAWs) we compute the inhomogeneous pressure exerted by a two-dimensional end-grafted polymer on the grafting line which limits a semi-infinite square lattice. The results for SAWs show that…
The space writhe of a knot is a property of its three-dimensional embedding that contains information about its underlying topology, but the correspondence between space writhe and other topological invariants is not fully understood. We…
We develop a framework for discrete p-density and compression-radius profiles of lattice knots. For lattice polygons representing a fixed knot type, we define scale-free density quantities by dividing lattice length by chord-length spread…
We study the entropic force due to a fluctuating semiflexible polymer that is grafted from one end and confined by a rigid and rough wall from the other end. We show how roughness of the wall modifies the entropic force. In addition to the…
This paper visualizes a knot reduction algorithm
Simple closed curves in the plane can be mapped to nontrivial knots under the action of origami foldings that allow the paper to self-intersect. We show all tame knot types may be produced in this manner, motivating the development of a new…
By performing Monte Carlo sampling of $N$-steps self-avoiding polygons embedded on different Bravais lattices we explore the robustness of universality in the entropic, metric and geometrical properties of knotted polymer rings. In…
The ropelength of a knot is the minimum contour length of a tube of unit radius that traces out the knot in three dimensional space without self-overlap, colloquially the minimum amount of rope needed to tie a given knot. Theoretical upper…
We investigate the sliding strength of thin filaments in frictional contact with a translating cylinder, perpendicular to the filaments' axes, in knotted (clove hitch) and unknotted (capstan) configurations. Recent work reported superlinear…