Related papers: Lattice Knots in a Slab
We present experimental results on knotting in off-lattice self-avoiding polygons in the bead-chain model. Using Clisby's tree data structure and the scale-free pivot algorithm, for each $k$ between $10$ and $27$ we generated $2^{43-k}$…
We study several related models of self-avoiding polygons in a tubular subgraph of the simple cubic lattice, with a particular interest in the asymptotics of the knotting statistics. Polygons in a tube can be characterised by a finite…
We compare Monte Carlo simulations of knotted and unknotted polymers whose ends are connected to two parallel walls. The force $f$ exerted on the polymer is measured as a function of the separation $R$ between the walls. For unknotted…
Motivated by recent advances in single molecule manipulation techniques that enabled several groups to tie knots in individual polymer strands and to monitor their dynamics, we have used computer simulations to study "friction knots"…
Many experiments have been done to determine the relative strength of different knots, and these show that the break in a knotted rope almost invariably occurs at a point just outside the `entrance' to the knot. The influence of knots on…
Semiflexible polymer models are widely used as a paradigm to understand structural phases in biomolecules including folding of proteins. Since stable knots are not so common in real proteins, the existence of stable knots in semiflexible…
We present a detailed study of a two-dimensional minimal lattice model for the description of mud cracking in the limit of extremely thin layers. In this model each bond of the lattice is assigned to a (quenched) breaking threshold.…
Truss structures composed of members that work exclusively in tension or in compression appear in several problems of science and engineering, e.g., in the study of the resisting mechanisms of masonry structures, as well as in the design of…
A coarse-grained computational model is used to investigate how the bending rigidity of a polymer under tension affects the formation of a trefoil knot. Thermodynamic integration techniques are applied to demonstrate that the free-energy…
We derive a formula for the entanglement entropy of squeezed states on a lattice in terms of the complex structure J. The analysis involves the identification of squeezed states with group-theoretical coherent states of the symplectic group…
We present Monte Carlo computer simulations for melts of semiflexible randomly knotted and randomly concatenated ring polymers on the fcc lattice and in slit confinement. Through systematic variation of the slit width at fixed melt density,…
We study the friction between a flat solid surface where polymer chains have been end-grafted and a cross-linked elastomer at low sliding velocity. The contribution of isolated grafted chains' penetration in the sliding elastomer has been…
The stick number and the edge length of a knot type in the simple hexagonal lattice (sh-lattice) are the minimal numbers of sticks and edges required, respectively, to construct a knot of the given type in sh-lattice. By introducing a…
An analysis of extensive simulations of interacting self-avoiding polygons on cubic lattice shows that the frequencies of different knots realized in a random, collapsed polymer ring decrease as a negative power of the ranking order, and…
This survey reviews Kauffman's model of folded ribbon knots: knots made of a thin strip of paper folded flat in the plane. The ribbonlength is the length to width ratio of such a ribbon, and the ribbonlength problem asks to minimize the…
The interplay between the topological and geometrical properties of a polymer ring can be clarified by establishing the entanglement trapped in any portion (arc) of the ring. The task requires to close the open arcs into a ring, and the…
We study the entanglement complexity of a system consisting of two simple-closed curves (self-avoiding polygons) that span a lattice tube, referred to as a 2SAP. 2SAPs are of interest as the first known model of confined ring polymers where…
New results on the groundstate energy of tight, magnetic knots are presented. Magnetic knots are defined as tubular embeddings of the magnetic field in an ideal, perfectly conducting, incompressible fluid. An orthogonal, curvilinear…
The ropelength of a knot is the quotient of its length and its thickness, the radius of the largest embedded normal tube around the knot. We prove existence and regularity for ropelength minimizers in any knot or link type; these are…
In this paper, we show that for each lattice basis, there exists an equivalent basis which we describe as ``strongly reduced''. We show that bases reduced in this manner exhibit rather ``short'' basis vectors, that is, the length of the…