Related papers: Lattice Knots in a Slab
In this work the thermodynamic properties of short polymer knots (up to 120 segments) defined on a simple cubic lattice are studied with the help of the Wang-Landau Monte Carlo algorithm. The sampling process is performed using pivot…
Simulations in which a globular ring polymer with delocalized knots is separated in two interacting loops by a slipping link, or in two non-interacting globuli by a wall with a hole, show how the minimal crossing number of the knots…
We study self-avoiding walks on restricted square lattices, more precisely on the lattice strips $\mathbb{Z} \times \{-1,0,1\}$ and $\mathbb{Z}\times \{-1,0,1,2\}$. We obtain the value of the connective constant for the $\mathbb{Z} \times…
Using molecular dynamics we study the dependence of the friction force on the sliding speed when an elastic slab (block) is sliding on a rigid substrate with a ${\rm sin} (q_0 x)$ surface height profile. The friction force is nearly…
In this paper, we present a nonlinear least-squares fitting algorithm using B-splines with free knots. Since its performance strongly depends on the initial estimation of the free parameters (i.e. the knots), we also propose a fast and…
The maximum length of the shortest path from a leaf to the root of a skein tree for knots and links gives a measure of the complexity of computing link polynomials by the skein relation (the Jones polynomial, the Alexander-Conway…
Stochastic simulations are used to characterize the knotting distributions of random ring polymers confined in spheres of various radii. The approach is based on the use of multiple Markov chains and reweighting techniques, combined with…
Topological entanglements are abundant, and often detrimental, in polymeric systems in biology and materials science. Here we theoretically investigate the topological simplification of knots by diffusing slip-links (SLs), which may…
We present a statistical mechanical study of stiff polymers, motivated by experiments on actin filaments and the considerable current interest in polymer networks. We obtain simple, approximate analytical forms for the force-extension…
The stick number of a knot is the minimum number of segments needed to build a polygonal version of the knot. Despite its elementary definition and relevance to physical knots, the stick number is poorly understood: for most knots we only…
A comprehensive overview of lattice rules and polynomial lattice rules is given for function spaces based on $\ell_p$ semi-norms. Good lattice rules and polynomial lattice rules are defined as those obtaining worst-case errors bounded by…
An extensive study of single block copolymer knots containing two kinds of monomers $A$ and $B$ is presented. The knots are in a solution and their monomers are subjected to short range interactions that can be attractive or repulsive. In…
This paper studies the lattice agreement problem and proposes a stronger form, $\varepsilon$-bounded lattice agreement, that enforces an additional tightness constraint on the outputs. To formalize the concept, we define a quasi-metric on…
Minimum braids are a complete invariant of knots and links. This paper defines minimum braids, describes how they can be generated, presents tables for knots up to ten crossings and oriented links up to nine crossings, and uses minimum…
We find a power law for the number of knot-monomers with an exponent $0.39 \pm0.13$ in agreement with previous simulations. For the average size of a knot we also obtain a power law $N_m=2.56\cdot N^{0.20\pm0.04}$. We further present data…
We predict theoretically that surface of an optical lattice imprinted in defocusing nonlinear media can support shock, or kink waves. Such new surface waves contain a modulationally stable pedestal and are strongly localized at the edge of…
Given a thin strip of paper, tie a knot, connect the ends, and flatten into the plane. This is a physical model of a folded ribbon knot in the plane, first introduced by Louis Kauffman. We study the folded ribbonlength of these folded…
In this paper, we study reducible surgeries on knots in $S^3$. We develop thickness bounds for L-space knots that admit reducible surgeries, and lower bounds on the slice genus for general knots that admit reducible surgeries. The L-space…
We prove a version of symmetric criticality for ropelength-critical knots. Our theorem implies that a knot or link with a symmetric representative has a ropelength-critical configuration with the same symmetry. We use this to construct new…
The most tight conformations of prime knots are found with the use of the SONO algorithm. Their curvature and torsion profiles are calculated. Symmetry of the knots is analysed. Connections with the physics of polymers are discussed.