Related papers: DNA Circuits Based on Isothermal Constrained Loop …
We analyse the effects of the environment (solvent quality, presence of extended structures - crowded environment) that may have impact on the order of the transition between denaturated and bounded DNA states and lead to changes in the…
Earlier formulations of the DNA assembly problem were all in the context of perfect assembly; i.e., given a set of reads from a long genome sequence, is it possible to perfectly reconstruct the original sequence? In practice, however, it is…
In optical communications, the Raman effect is exploited for its lasing properties in distributed Raman amplification (DRA) and leads to spectral distortions through inter-channel stimulated Raman scattering (ISRS). In single-mode fibers,…
Domain adaptation is an attractive approach given the availability of a large amount of labeled data with similar properties but different domains. It is effective in image classification tasks where obtaining sufficient label data is…
DNA has a well-defined structural transition -- the denaturation of its double-stranded form into two single strands -- that strongly affects its thermal transport properties. We show that, according to a widely implemented model for DNA…
Internal Diffusion Limited Aggregation is an interacting particle system that describes the growth of a random cluster governed by the boundary harmonic measure seen from an internal point. Our paper studies IDLA in $\mathbb{Z}^d$ driven by…
We experimentally demonstrate that information replication by templated ligation of DNA strands inherits a kinetic proofreading mechanism and achieves significant error suppression through cascade replication. A simple simulation model…
Repeating a gate sequence multiple times amplifies systematic errors coherently, making it a useful tool for characterizing quantum gates. However, the precision of such an approach is limited by low-frequency noises, while its efficiency…
We demonstrate a catalytic control method for speeding up the single-molecule DNA motor introduced by Li and Tan [Nano Lett. {\bf 2}, 315 (2002)]. A key rate-limiting barrier in the reaction part of the cycle is the tendency for the second…
The overwhelming amount of biomedical scientific texts calls for the development of effective language models able to tackle a wide range of biomedical natural language processing (NLP) tasks. The most recent dominant approaches are…
We examine the elastic model of short circular DNA. We obtain analytic expressions for configurations, elastic energy, twist and linking number of our solutions. We find the onset of the plectonemic transition. We suggest ways to use our…
We study electronic transport in long DNA chains using the tight-binding approach for a ladder-like model of DNA. We find insulating behavior with localizaton lengths xi ~ 25 in units of average base-pair seperation. Furthermore, we observe…
In laser illuminated dielectric accelerators (DLA) high acceleration gradients can be achieved, due to high damage thresholds of the materials at optical frequencies. This is a necessity in developing more compact particle accelerator…
We propose a DNA sequencing scheme based on silicene nanopores. Using first principles theory, we compute the electrical properties of such pores in the absence and presence of nucleobases. Within a two-terminal geometry, we analyze the…
Parts of DNA sequences known as exons and introns play very different role in coding and storage of genetic information. Here we show that their conducting properties are also very different. Taking into account long-range correlations…
Generative adversarial network (GAN) still exists some problems in dealing with speech enhancement (SE) task. Some GAN-based systems adopt the same structure from Pixel-to-Pixel directly without special optimization. The importance of the…
This paper proposes a generalized framework for domain adaptation of Probabilistic Linear Discriminant Analysis (PLDA) in speaker recognition. It not only includes several existing supervised and unsupervised domain adaptation methods but…
In this paper we have discussed theoretical concepts and presented numerical results of local field enhancement at the core of different assemblages of metal/dielectric cylindrical nanoinclusions embedded in a linear dielectric host matrix.…
We present a self-contained theory for the mechanical response of DNA in single molecule experiments. Our model is based on a 1D continuum description of the DNA molecule and accounts both for its elasticity and for DNA-DNA electrostatic…
Protection of the sensitive content is crucial for extensive information sharing. We present a technique of information concealing, based on introduction and maintenance of families of repeats. Repeats in DNA constitute a basic obstacle for…