Related papers: DNA Circuits Based on Isothermal Constrained Loop …

We report an accurate method to determine DNA barcodes from the dwell time measurement of protein tags (barcodes) along the DNA backbone using Brownian dynamics simulation of a model DNA and use a recursive theoretical scheme which improves…

Understanding the intention of the users and recognizing the semantic entities from their sentences, aka natural language understanding (NLU), is the upstream task of many natural language processing tasks. One of the main challenges is to…

This paper develops a novel nested sequent proof-search methodology for intuitionistic tense logics (ITLs), supporting finite counter-model extraction. We introduce a new loop-checking method that detects repeating nested sequents using…

Prompt-based methods have gained increasing attention on NLP and shown validity on many downstream tasks. Many works have focused on mining these methods' potential for knowledge extraction, but few explore their ability to make logical…

Deep neural networks (DNNs) offer plenty of challenges in executing efficient computation at edge nodes, primarily due to the huge hardware resource demands. The article proposes HYDRA, hybrid data multiplexing, and runtime layer…

Audio representation learning based on deep neural networks (DNNs) emerged as an alternative approach to hand-crafted features. For achieving high performance, DNNs often need a large amount of annotated data which can be difficult and…

This paper presents an efficient speech enhancement (SE) approach that reuses a processing block repeatedly instead of conventional stacking. Rather than increasing the number of blocks for learning deep latent representations, repeating a…

Tandem duplication is the process of inserting a copy of a segment of DNA adjacent to the original position. Motivated by applications that store data in living organisms, Jain et al. (2017) proposed the study of codes that correct tandem…

Sequencing a DNA strand, as part of the read process in DNA storage, produces multiple noisy copies which can be combined to produce better estimates of the original strand; this is called trace reconstruction. One can reduce the error rate…

Data augmentation is an effective way to diversify corpora in machine translation, but previous methods may introduce semantic inconsistency between original and augmented data because of irreversible operations and random subword sampling…

We use an optimised perturbation expansion called the linear delta-expansion to study the phase transition in a Higgs sector with a continuous symmetry and large couplings. Our results show how to use this non-perturbative method…

Due to their sequential nature, traditional DNA synthesis methods are expensive in terms of time and resources. They also fabricate multiple copies of the same strand, introducing redundancy. This redundancy can be leveraged to enhance the…

We show that DNN accelerator micro-architectures and their program mappings represent specific choices of loop order and hardware parallelism for computing the seven nested loops of DNNs, which enables us to create a formal taxonomy of all…

Unsupervised Domain Adaptation (UDA) is essential for enabling semantic segmentation in new domains without requiring costly pixel-wise annotations. State-of-the-art (SOTA) UDA methods primarily use self-training with architecturally…

Recent research in synthesis of programs written in some Domain Specific Language (DSL) by means of neural networks from a limited set of inputs-output correspondences such as DeepCoder and its PCCoder reimplementation/optimization proved…

We study the folding of RNA secondary structures with quenched sequence randomness by means of the constrained annealing method. A thermodynamic phase transition is induced by including the conformational weight of loop structures. In…

We show the existence of a high interrelation between the different loops that may appear in a DNA segment. Conformational changes in a chain segment caused by the formation of a particular loop may either promote or prevent the appearance…

The determination of a patient's DNA sequence can, in principle, reveal an increased risk to fall ill with particular diseases [1,2] and help to design "personalized medicine" [3]. Moreover, statistical studies and comparison of genomes [4]…

We explore amplification and cross-Kerr nonlinearity by a three-level emitter (3LE) embedded in a waveguide and driven by two light beams. The coherent amplification and cross-Kerr nonlinearity were demonstrated in recent experiments,…

DNA data storage offers a high-density, long-term alternative to traditional storage systems, addressing the exponential growth of digital data. Composite DNA extends this paradigm by leveraging mixtures of nucleotides to increase storage…