Related papers: Knotting probabilities after a local strand passag…
$\newcommand{\Emph}[1]{{\it{#1}}} \newcommand{\FF}{\mathcal{F}}\newcommand{\region}{\mathsf{r}}\newcommand{\restrictY}[2]{#1 \cap {#2}}$For a set of points $P \subseteq \mathbb{R}^2$, and a family of regions $\FF$, a…
We present new computations of approximately length-minimizing polygons with fixed thickness. These curves model the centerlines of "tight" knotted tubes with minimal length and fixed circular cross-section. Our curves approximately…
We produce the first examples of closed, tight contact 3-manifolds which become overtwisted after performing admissible transverse surgeries. Along the way, we clarify the relationship between admissible transverse surgery and Legendrian…
Laughlin states have recently been constructed on fractal lattices, and the charge and braiding statistics of the quasiholes were used to confirm that these states have Laughlin type topology. Here, we investigate density, correlation, and…
We discuss the relation between the emergence of new phases with broken symmetry within the framework of simple models of biopolymers. We start with a classic model for a chain molecule of spherical beads tethered together, with the steric…
The trace of $n$-framed surgery on a knot in $S^3$ is a 4-manifold homotopy equivalent to the 2-sphere. We characterise when a generator of the second homotopy group of such a manifold can be realised by a locally flat embedded 2-sphere…
We study a family of scale-invariant $p$-densities of knot types in $R^3$, defined as the ratio of length to an $L^p$-type spread of pairwise distances along a curve. The first point of the paper is that the unconstrained theory has a…
In simulations of a model with topological sectors, algorithms which proceed in small update steps tend to get stuck in one sector, especially on fine lattices. This distorts the numerical results; in particular it is not straightforward to…
The entropic pressure in the vicinity of a cubic lattice knot is examined as a model of the entropic pressure near a knotted ring polymer in a good solvent. A model for the scaling of the pressure is developed and this is tested numerically…
Constructing a spanning tree of a graph is one of the most basic tasks in graph theory. We consider this problem in the setting of local algorithms: one wants to quickly determine whether a given edge $e$ is in a specific spanning tree,…
Metastability thresholds lie at the heart of bootstrap percolation theory. Yet proving precise lower bounds is notoriously hard. We show that for two of the most classical models, two-neighbour and Frob\"ose, upper bounds are sharp to…
We study the structure of the asymptotic expansion of the probability that a combinatorial object is connected. We show that the coefficients appearing in those asymptotics are integers and can be interpreted as the counting sequences of…
We propose a mechanism in which two molecular knots pass through each other and swap positions along a polymer strand. Associated free energy barriers in our simulations only amount to a few $k_{B}T$, which may enable the interchange of…
We consider a one-dimensional simple random walk surviving among a field of static soft traps : each time it meets a trap the walk is killed with probability 1--e --$\beta$ , where $\beta$ is a positive and fixed parameter. The positions of…
Scattering of matter waves through slits has been explored using the Feynman Path Integral formalism. We explicitly plot the near-zero probability densities to analyse the behaviour near the slit. Upon doing so, intriguing patterns emerge,…
Knots are abundant in globular homopolymers but rare in globular proteins. To shed new light on this long-standing conundrum, we study the influence of sequence on the formation of knots in proteins under native conditions within the…
We consider the equiprobable distribution of spanning trees on the square lattice. All bonds of each tree can be oriented uniquely with respect to an arbitrary chosen site called the root. The problem of predecessors is finding the…
We discuss an "extrinsic" property of knots in a 3-subspace of the 3-sphere $S^3$ to characterize how the subspace is embedded in $S^3$. Specifically, we show that every knot in a subspace of the 3-sphere is transient if and only if the…
Following Bradonji\'c and Saniee, we study a model of bootstrap percolation on the Gilbert random geometric graph on the $2$-dimensional torus. In this model, the expected number of vertices of the graph is $n$, and the expected degree of a…
We prove that the local limit of the weighted spanning trees on any simple connected high degree almost regular sequence of electric networks is the Poisson(1) branching process conditioned to survive forever, by generalizing [NP22] and…