Related papers: Knotting probabilities after a local strand passag…
Motivated by recent advances in single molecule manipulation techniques that enabled several groups to tie knots in individual polymer strands and to monitor their dynamics, we have used computer simulations to study "friction knots"…
A planar self-avoiding walk (SAW) is a nearest neighbor random walk path in the square lattice with no self-intersection. A planar self-avoiding polygon (SAP) is a loop with no self-intersection. In this paper we present conjectures for the…
For a graph $G$ on $n$ vertices, naively sampling the position of a random walk of at time $t$ requires work $\Omega(t)$. We desire local access algorithms supporting $\text{position}(G,s,t)$ queries, which return the position of a random…
We investigate the following vertex percolation process. Starting with a random regular graph of constant degree, delete each vertex independently with probability p, where p=n^{-alpha} and alpha=alpha(n) is bounded away from 0. We show…
We give three algorithms to determine the crosscap number of a knot in the 3-sphere using $0$-efficient triangulations and normal surface theory. Our algorithms are shown to be correct for a larger class of complements of knots in closed…
We study pseudo-classical knots in the non-orientable thickening of a non-orientable surface, specifically knots that are orientation-preserving paths in a non-orientable $3$-manifold of the form (non-orientable surface) $\times$ $[0, 1]$.…
Monte Carlo simulations are used to study the conformational behavior of a semiflexible polymer confined to cylindrical and conical channels. The channels are sufficiently narrow that the conditions for the Odijk regime are marginally…
A model of random walk on knot diagrams is used to study the Alexander polynomial and the colored Jones polynomial of knots. In this context, the inverse of the Alexander polynomial of a knot plays the role of an Ihara-Selberg zeta function…
The interplay of topological constraints and Coulomb interactions in static and dynamic properties of charged polymers is investigated by numerical simulations and scaling arguments. In the absence of screening, the long-range interaction…
The complex interactions involved in regulation of a cell's function are captured by its interaction graph. More often than not, detailed knowledge about enhancing or suppressive regulatory influences and cooperative effects is lacking and…
This paper contains the strongest and at the same time most calculable knot invariant ever. Let $\Theta$ be the topological moduli space of all ordered oriented tangles in 3-space. We construct a non-trivial combinatorial 1-cocycle…
We study nearest-neighbors branching random walks started from a point at the interior of a hypercube. We show that the probability that the process escapes the hypercube is monotonically decreasing with respect to the distance of its…
We prove that the detection rate of n-crossing alternating links by many standard link invariants decays exponentially in n, implying that they detect alternating links with probability zero. This phenomenon applies broadly, in particular…
We consider a self-avoiding walk on the dual $\mathbb{Z}^2$ lattice. This walk can traverse the same square twice but cannot cross the same edge more than once. The weight of each square visited by the walk depends on the way the walk…
In order to model entanglements of polymers in a confined region, we consider the linking numbers and writhes of cycles in random linear embeddings of complete graphs in a cube. Our main results are that for a random linear embedding of…
The (ordinary) unknotting-number of 1-dimensional knots, which is defined by using the crossing-change, is a very basic and important invariant. It is very natural to consider the `unknotting-number' associated with other local-moves on…
We explore the states of matter arising from the spontaneous symmetry breaking (SSB) of $\mathbb{Z}_2$ non-onsite symmetries. In one spatial dimension, we construct a frustration-free lattice model exhibiting SSB of a non-onsite symmetry,…
A lattice model of RNA denaturation which fully accounts for the excluded volume effects among nucleotides is proposed. A numerical study shows that interactions forming pseudoknots must be included in order to get a sharp continuous…
We determine the large size limit of a network of interacting Hawkes Processes on an adaptive network. The flipping of the node variables is taken to have an intensity given by the mean-field of the afferent edges and nodes. The flipping of…
We establish the sharpness of the percolation phase transition for a class of infinite-range weighted random connection models. The vertex set is given by a marked Poisson point process on $\mathbb{R}^d$ with intensity $\lambda>0$, where…