Related papers: The phylogeny graphs of doubly partial orders
A graph is circle if there is a family of chords in a circle such that two vertices are adjacent if the corresponding chords cross each other. There are diverse characterizations of circle graphs, many of them using the notions of local…
A mixed graph can be seen as a type of digraph containing some edges (two opposite arcs). Here we introduce the concept of sequence mixed graphs, which is a generalization of both sequence graphs and iterated line digraphs. These structures…
If the vertices composing a network interact at distinct time points, the temporal ordering of these interactions and the network's graph structure are sufficient to convey the routes by which information can flow in the network. Two…
Horizontal gene transfer is an important contributor to evolution. According to Walter M.\ Fitch, two genes are xenologs if they are separated by at least one HGT. More formally, the directed Fitch graph has a set of genes is its vertices,…
For each positive integer $n$, we define the divisibility relation graph $D_n$ whose vertex set is the set of divisors of $n$, and in which two vertices are adjacent if one is a divisor of the other. This type of graph is a special case of…
The paper examines a partial order on bipartite graphs (X1, X2, E) with n vertices, X1UX2={1,2,...,n}. This partial order is a natural partial order of subobjects of an object in a triangular category with bipartite graphs as morphisms.
A sequence $D=(d_1,d_2,\ldots,d_n)$ of non-negative integers is called a graphic sequence if there is a simple graph with vertices $v_1,v_2,\ldots,v_n$ such that the degree of $v_i$ is $d_i$ for $1\leq i\leq n$. Given a graph theoretical…
A split graph is a graph whose vertex set can be partitioned into a clique and an independent set. A split comparability graph is a split graph which is transitively orientable. In this work, we characterize split comparability graphs in…
For an undirected, simple, finite, connected graph $G$, we denote by $V(G)$ and $E(G)$ the sets of its vertices and edges, respectively. A function $\varphi:E(G)\rightarrow\{1,2,\ldots,t\}$ is called a proper edge $t$-coloring of a graph…
A graph $G$ is said to be a `set graph' if it admits an acyclic orientation that is also `extensional', in the sense that the out-neighborhoods of its vertices are pairwise distinct. Equivalently, a set graph is the underlying graph of the…
In this paper, we extend the recently introduced concept of partially dual ribbon graphs to graphs. We then go on to characterize partial duality of graphs in terms of bijections between edge sets of corresponding graphs. This result…
The competition graph of a directed acyclic graph D is the undirected graph on the same vertex set as D in which two distinct vertices are adjacent if they have a common out-neighbor in D. The competition number of an undirected graph G is…
A new conceptual foundation for the notion of "information" is proposed, based on the concept of a "distinction graph": a graph in which two nodes are connected iff they cannot be distinguished by a particular observer. The "graphtropy" of…
Fitch graphs $G=(X,E)$ are di-graphs that are explained by $\{\otimes,1\}$-edge-labeled rooted trees with leaf set $X$: there is an arc $xy\in E$ if and only if the unique path in $T$ that connects the least common ancestor…
Let H be a connected bipartite graph with n nodes and m edges. We give an O(nm) time algorithm to decide whether H is an interval bigraph. The best known algorithm has time complexity O(nm^6(m + n) \log n) and it was developed in 1997 [18].…
A vertex with neighbours of degrees $d_1 \geq ... \geq d_r$ has {\em vertex type} $(d_1, ..., d_r)$. A graph is {\em vertex-oblique} if each vertex has a distinct vertex-type. While no graph can have distinct degrees, Schreyer, Walther and…
Many standard graph classes are known to be characterized by means of layouts (a permutation of its vertices) excluding some patterns. Important such graph classes are among others: proper interval graphs, interval graphs, chordal graphs,…
Intersection graphs of geometric objects have been extensively studied, both due to their interesting structure and their numerous applications; prominent examples include interval graphs and permutation graphs. In this paper we study a…
In this paper, we propose a characterization of chordal bipartite graphs and an efficient enumeration algorithm for chordal bipartite induced subgraphs. A chordal bipartite graph is a bipartite graph without induced cycles with length six…
Phylogenetic networks are a type of directed acyclic graph that represent how a set $X$ of present-day species are descended from a common ancestor by processes of speciation and reticulate evolution. In the absence of reticulate evolution,…