Related papers: The phylogeny graphs of doubly partial orders
A graph $X$ is said to be a pattern polynomial graph if its adjacency algebra is a coherent algebra. In this study we will find a necessary and sufficient condition for a graph to be a pattern polynomial graph. Some of the properties of the…
An edge coalition in a graph $G=(V,E)$ consists of two disjoint sets of edges $E_1$ and $E_2$, neither of which is an edge dominating set but whose union $E_1\cup E_2$ is an edge dominating set. An edge coalition partition in a graph $G$ of…
Recent investigations in computational biology have focused on a family of 2-colored digraphs, called 2-colored best match graphs, which naturally arise from rooted phylogenetic trees. Actually the defining properties of such graphs are…
The distinguishing number (index) $D(G)$ ($D'(G)$) of a graph $G$ is the least integer $d$ such that $G$ has an vertex labeling (edge labeling) with $d$ labels that is preserved only by a trivial automorphism. In this paper we compute these…
Consider a graph $G$ where each vertex is visibly labelled as a member of a distinct class, but also has a hidden binary state: wild or tame. Edges with end points in the same class are called agreement edges. Premise: an edge connecting…
A digraph is attached to any evolution algebra. This graph leads to some new purely algebraic results on this class of algebras and allows for some new natural proofs of known results. Nilpotency of an evolution algebra will be proved to be…
The exchange graph of a cluster algebra encodes the combinatorics of mutations of clusters. Through the recent "categorifications" of cluster algebras using representation theory one obtains a whole variety of exchange graphs associated…
The class of intersection bigraphs of unit intervals of the real line whose ends may be open or closed is called a class of mixed unit interval bigraphs. This class of bigraphs is a strict superclass of the class of unit interval bigraphs.…
We study the complexity of the Graph Isomorphism problem on graph classes that are characterized by a finite number of forbidden induced subgraphs, focusing mostly on the case of two forbidden subgraphs. We show hardness results and develop…
Context: Edge graphs are graphs whose edges are labelled with identifiers, and nodes can have multiple edges between them. They are used to model a wide range of systems, including networks with distances or degrees of connection and…
A graph $G=(V,E)$ with a vertex set $V$ and an edge set $E$ is called a pairwise compatibility graph (PCG, for short) if there are a tree $T$ whose leaf set is $V$, a non-negative edge weight $w$ in $T$, and two non-negative reals…
Deciding whether a collection of unrooted trees is compatible is a fundamental problem in phylogenetics. Two different graph-theoretic characterizations of tree compatibility have recently been proposed. In one of these, tree compatibility…
Distance-hereditary graphs are known to be the graphs that are totally decomposable for the split decomposition. We characterise distance-hereditary graphs whose complement is also distance-hereditary by their split decomposition and by…
\noindent A paired coalition in a graph $G=(V,E)$ consists of two disjoint sets of vertices $V_1$ and $V_2$, neither of which is a paired dominating set but whose union $V_1 \cup V_2$ is a paired dominating set. A paired coalition partition…
Invariants for complicated objects such as those arising in phylogenetics, whether they are invariants as matrices, polynomials, or other mathematical structures, are important tools for distinguishing and working with such objects. In this…
A bipartite graph $G=(A, B, E)$ is said to be a biconvex bipartite graph if there exist orderings $<_A$ in $A$ and $<_B$ in $B$ such that the neighbors of every vertex in $A$ are consecutive with respect to $<_B$ and the neighbors of every…
Graphs derived from groups are a widely studied class of graphs, motivated by their highly symmetric structure. In particular, G-graphs offer an easy and interesting alternative construction of semi-symmetric graphs. After recalling the…
We define a variety of doubly indexed flags, this is a smooth, projective variety, and we describe it as an iterated over Grassmannian varieties. On the other hand, we consider the variety of partial flags which are stabilized by a given…
This article investigates the properties of order-divisor graphs associated with finite groups. An order-divisor graph of a finite group is an undirected graph in which the set of vertices includes all elements of the group, and two…
The vertices of an interval graph represent intervals over a real line where overlapping intervals denote that their corresponding vertices are adjacent. This implies that the vertices are measurable by a metric and there exists a linear…