Related papers: The phylogeny graphs of doubly partial orders
To determine that two given undirected graphs are isomorphic, we construct for them auxiliary graphs, using the breadth-first search. This makes capability to position vertices in each digraph with respect to each other. If the given graphs…
A graph is reconstructible if it is determined up to isomorphism by the multiset of its proper induced subgraphs. The reconstruction conjecture postulates that every graph of order at least 3 is reconstructible. We show that interval graphs…
The implicit graph conjecture states that every sufficiently small, hereditary graph class has a labeling scheme with a polynomial-time computable label decoder. We approach this conjecture by investigating classes of label decoders defined…
A simple-triangle graph (also known as a PI graph) is the intersection graph of a family of triangles defined by a point on a horizontal line and an interval on another horizontal line. The recognition problem for simple-triangle graphs was…
It was noted already in the 90s that many classic graph classes, such as interval, chordal, and bipartite graphs, can be characterized by the existence of an ordering of the vertices avoiding some ordered subgraphs, called patterns. Very…
The algebraic degree $Deg(G)$ of a graph $G$ is the dimension of the splitting field of the adjacency polynomial of $G$ over the field $\mathbb{Q}$. It can be shown that for every positive integer $d$, there exists a circulant graph with…
Let $G(V, E)$ be a finite, simple, isolate-free graph. A set $D$ of vertices of a graph $G$ with the vertex set $V$ is a double dominating set of $G$, if every vertex $v\in D$ has at least one neighbor in $D$ and every vertex $v \in V…
We study subclasses of grid intersection graphs from the perspective of order dimension. We show that partial orders of height two whose comparability graph is a grid intersection graph have order dimension at most four. Starting from this…
The status of a vertex $x$ in a graph is the sum of the distances between $x$ and all other vertices. Let $G$ be a connected graph. The status sequence of $G$ is the list of the statuses of all vertices arranged in nondecreasing order. $G$…
The Burling sequence is a sequence of triangle-free graphs of increasing chromatic number. Any graph which is an induced subgraph of a graph in this sequence is called a Burling graph. These graphs have attracted some attention because they…
Consider a graph $G$ with a path $P$ of order $n$. What conditions force $G$ to also have a long induced path? As complete bipartite graphs have long paths but no long induced paths, a natural restriction is to forbid some fixed complete…
A proper edge-coloring of a graph is an interval coloring if the labels on the edges incident to any vertex form an interval of consecutive integers. Interval thickness s(G) of a graph G is the smallest number of interval colorable graphs…
Let $G$ be an $n$-vertex connected graph. A cyclic base ordering of $G$ is a cyclic ordering of all edges such that every cyclically consecutive $n-1$ edges induce a spanning tree of $G$. In this project, we study cyclic base ordering of…
An interval coloring of a graph G is a proper coloring of E(G) by positive integers such that the colors on the edges incident to any vertex are consecutive. A (3,4)-biregular bigraph is a bipartite graph in which each vertex of one part…
Let F be a set of ordered patterns, i.e., graphs whose vertices are linearly ordered. An F-free ordering of the vertices of a graph H is a linear ordering of V(H) such that none of patterns in F occurs as an induced ordered subgraph. We…
For any class $\mathcal{C}$ of bipartite graphs, we define quasi-$\cal C$ to be the class of all graphs $G$ such that every bipartition of $G$ belongs to $\cal C$. This definition is motivated by a generalisation of the switch Markov chain…
We enumerate graph homomorphisms to quasi-complete graphs, i.e., graphs obtained from complete graphs by removing one edge. The source graphs are complete graphs, quasi-complete graphs, cycles, paths, wheels and broken wheels. These…
Two genes are xenologs in the sense of Fitch if they are separated by at least one horizontal gene transfer event. Horizonal gene transfer is asymmetric in the sense that the transferred copy is distinguished from the one that remains…
Phylogenetics is the study of the evolutionary relationships between organisms. One of the main challenges in the field is to take biological data for a group of organisms and to infer an evolutionary tree, a graph that represents these…
Models of complex networks are generally defined as graph stochastic processes in which edges and vertices are added or deleted over time to simulate the evolution of networks. Here, we define a unifying framework - probabilistic inductive…