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Mitochondrial diseases are largely caused by dysfunction in mitochondrial proteins. However, annotations of human mitochondrial proteins are scattered across various public databases and individual studies. To facilitate research aimed at…

Biomolecules · Quantitative Biology 2021-05-04 Masahito Ohue , Hiroki Watanabe , Yutaka Akiyama

Plasmodium of Physarum polycephalum is a single cell visible by unaided eye. During its foraging behaviour the cell spans spatially distributed sources of nutrients with a protoplasmic network. Geometrical structure of the protoplasmic…

Pattern Formation and Solitons · Physics 2015-05-14 Andrew Adamatzky , Jeff Jones

Warfarin dosing remains challenging due to narrow therapeutic index and highly individual variability. Incorrect warfarin dosing is associated with devastating adverse events. Remarkable efforts have been made to develop the machine…

Quantitative Methods · Quantitative Biology 2018-09-14 Zhiyuan Ma , Ping Wang , Zehui Gao , Ruobing Wang , Koroush Khalighi

We are starting a project to find $\gamma$-ray millisecond pulsars (MSPs) among the unidentified sources detected by the Large Area Telescope (LAT) onboard the {Fermi Gamma-Ray Space Telescope (Fermi)}, by radio observations. The selection…

High Energy Astrophysical Phenomena · Physics 2019-03-04 Xuejie Dai , Zhongxiang Wang , Jithesh Vadakkumthani

Monoclonal antibodies (mAbs) represent one of the most prevalent FDA-approved modalities for treating autoimmune diseases, infectious diseases, and cancers. However, discovery and development of therapeutic antibodies remains a…

The task of decision-making under uncertainty is daunting, especially for problems which have significant complexity. Healthcare policy makers across the globe are facing problems under challenging constraints, with limited tools to help…

Artificial Intelligence · Computer Science 2017-12-04 Oliver Bent , Sekou L. Remy , Stephen Roberts , Aisha Walcott-Bryant

Malaria is a life-threatening disease affecting millions. Microscopy-based assessment of thin blood films is a standard method to (i) determine malaria species and (ii) quantitate high-parasitemia infections. Full automation of malaria…

In an era of escalating cyber threats, malware poses significant risks to individuals and organizations, potentially leading to data breaches, system failures, and substantial financial losses. This study addresses the urgent need for…

Cryptography and Security · Computer Science 2025-01-28 Marzieh Esnaashari , Nima Moradi

Malaria can be prevented, diagnosed, and treated; however, every year, there are more than 200 million cases and 200.000 preventable deaths. Malaria remains a pressing public health concern in low- and middle-income countries, especially in…

Machine Learning · Statistics 2023-03-20 África Periáñez , Andrew Trister , Madhav Nekkar , Ana Fernández del Río , Pedro L. Alonso

Identifying the interaction targets of bioactive compounds is a foundational element for deciphering their pharmacological effects. Target prediction algorithms equip researchers with an effective tool to rapidly scope and explore potential…

Machine Learning · Computer Science 2025-01-03 Haojie Wang , Zhe Zhang , Haotian Gao , Xiangying Zhang , Jingyuan Li , Zhihang Chen , Xinchong Chen , Yifei Qi , Yan Li , Renxiao Wang

We present a systematic study of gamma-ray blazar candidates based on a sample of 40 objects taken from the WIBR catalogue. By using a likelihood analysis, 26 of the 40 sources showed significant gamma-ray signatures $\geq3\sigma$. Using…

High Energy Astrophysical Phenomena · Physics 2021-07-14 Blessing Musiimenta , Bruno Sversut Arsioli , Edward Jurua , Tom Mutabazi

Among the ~2157 unassociated sources in the third data release (DR3) of the fourth Fermi catalog, ~1200 were observed with the Neil Gehrels Swift Observatory pointed instruments. These observations yielded 238 high S/N X-ray sources within…

High Energy Astrophysical Phenomena · Physics 2023-02-15 Amanpreet Kaur , Stephen Kerby , Abraham D. Falcone

Malaria is a parasitic disease that is a major health problem in many tropical regions. The most characteristic symptom of malaria is fever. The fraction of fevers that are attributable to malaria, the malaria attributable fever fraction…

Applications · Statistics 2016-05-26 Kwonsang Lee , Dylan S. Small

Bacteriophages are viruses that target bacteria, playing a crucial role in microbial ecology. Phage proteins are important in understanding phage biology, such as virus infection, replication, and evolution. Although a large number of new…

Quantitative Methods · Quantitative Biology 2024-08-20 Jiaojiao Guan , Yongxin Ji , Cheng Peng , Wei Zou , Xubo Tang , Jiayu Shang , Yanni Sun

The behavior of many Bayesian models used in machine learning critically depends on the choice of prior distributions, controlled by some hyperparameters that are typically selected by Bayesian optimization or cross-validation. This…

Machine Learning · Statistics 2023-10-09 Eliezer de Souza da Silva , Tomasz Kuśmierczyk , Marcelo Hartmann , Arto Klami

A mutation in a protein-coding gene in DNA can alter the protein structure coded by the same gene. Structurally altered proteins usually lose their functions and sometimes gain an undesirable function instead. These types of mutations and…

Quantitative Methods · Quantitative Biology 2017-08-29 Kaan Aygen , Berkay Celik , Umut Eser

Molecular docking is a critical computational strategy in drug design and discovery, but the complex diversity of biomolecular structures and flexible binding conformations create an enormous search space that challenges conventional…

Computational Physics · Physics 2025-03-27 Yihan He , Ming-Chun Hong , Qiming Ding , Chih-Sheng Lin , Chih-Ming Lai , Chao Fang , Xiao Gong , Tuo-Hung Hou , Gengchiau Liang

Blazars are a highly-variable, radio-loud subclass of active galactic nuclei (AGN). In order to better understand such objects we must be able to easily identify candidate blazars from the growing population of unidentified sources. Working…

High Energy Astrophysical Phenomena · Physics 2015-06-16 Philip S. Cowperthwaite , F. Massaro , R. D'Abrusco , A. Paggi , G. Tosti , Howard A. Smith

The majority of therapeutic monoclonal antibodies (mAbs) on the market are produced using Chinese Hamster Ovary (CHO) cells cultured at scale in chemically defined cell culture medium. Because of the high costs associated with mammalian…

Antibody therapeutics and vaccines are among our last resort to end the raging COVID-19 pandemic. They, however, are prone to over 5,000 mutations on the spike (S) protein uncovered by a Mutation Tracker based on over 200,000 genome…

Biomolecules · Quantitative Biology 2021-03-10 Jiahui Chen , Kaifu Gao , Rui Wang , Guowei Wei