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The identification of essential proteins in protein-protein interaction networks (PINs) can help to discover drug targets and prevent disease. In order to improve the accuracy of the identification of essential proteins, researchers…

Molecular Networks · Quantitative Biology 2023-12-08 Haoyue Wang , Li Pan , Bo Yang , Junqiang Jiang , Wenbin Li

Background: Network-based interventions are most powerful against epidemics when the full network structure is known. However, resource constraints often require decisions based on partial network data. We investigated how the effectiveness…

Populations and Evolution · Quantitative Biology 2018-03-30 Yingrui Yang , Ashley McKhann , Guy Harling , Jukka-Pekka Onnela

Objectives To test the feasibility of using Twitter data to assess determinants of consumers' health behavior towards Human papillomavirus (HPV) vaccination informed by the Integrated Behavior Model (IBM). Methods We used three Twitter…

Social and Information Networks · Computer Science 2019-07-29 Hansi Zhang , Christopher Wheldon , Adam G. Dunn , Cui Tao , Jinhai Huo , Rui Zhang , Mattia Prosperi , Yi Guo , Jiang Bian

Malaria is a mosquito-borne disease with a devastating global impact. Plasmodium vivax is a major cause of human malaria beyond sub-Saharan Africa. Relapsing infections, driven by a reservoir of liver-stage parasites known as hypnozoites,…

Populations and Evolution · Quantitative Biology 2021-07-05 Somya Mehra , Eva Stadler , David Khoury , James M. McCaw , Jennifer A. Flegg

Pore forming toxins (PFTs) are virulent proteins released by several species, including many strains of bacteria, to attack and kill host cells. In this article, we focus on the utility of molecular dynamics (MD) simulations and the…

Soft Condensed Matter · Physics 2021-08-17 Rajat Desikan , Amit Behera , Prabal K. Maiti , K. Ganapathy Ayappa

Aim: This study is looking for a common pathogenicity between SARS-CoV-2 and plasmodium species, in individuals with certain HLA serotypes. Methods: 1-) Tblastx searches of SARS-CoV-2 are performed by limiting searches to plasmodium species…

Other Quantitative Biology · Quantitative Biology 2021-06-22 Yekbun Adiguzel

Advances in machine learning have enabled the prediction of immune system responses to prophylactic and therapeutic vaccines. However, the engineering task of designing vaccines remains a challenge. In particular, the genetic variability of…

Quantitative Methods · Quantitative Biology 2023-01-30 Zheng Dai , David Gifford

Proteins perform nearly all cellular functions and constitute most drug targets, making their analysis fundamental to understanding human biology in health and disease. Tandem mass spectrometry (MS$^2$) is the major analytical technique in…

Biomolecules · Quantitative Biology 2025-09-01 Hao Xu , Zhichao Wang , Shengqi Sang , Pisit Wajanasara , Nuno Bandeira

Improvements to Zambia's malaria surveillance system allow better monitoring of incidence and targetting of responses at refined spatial scales. As transmission decreases, understanding heterogeneity in risk at fine spatial scales becomes…

The multiple worlds of genetically manipulated laboratory organisms such as transgenic mice or worms with certain gene mutations are somewhat reminiscent of parallel worlds in quantum mechanics. So are various models of aging tested in such…

Subcellular Processes · Quantitative Biology 2007-07-31 Razvan Tudor Radulescu

Virus-like particles (VLPs) are valuable for vaccine development due to their immune-triggering properties. Understanding their stoichiometry, the number of protein subunits to form a VLP, is critical for vaccine optimisation. However,…

Machine Learning · Computer Science 2025-02-18 Jiayang Zhang , Xianyuan Liu , Wei Wu , Sina Tabakhi , Wenrui Fan , Shuo Zhou , Kang Lan Tee , Tuck Seng Wong , Haiping Lu

As an important source of small molecule drugs, natural products show remarkable biological activities with their rich types and unique structures. However, due to the limited number of samples and structural complexity, the rapid discovery…

Social and Information Networks · Computer Science 2025-11-11 Pengwei Zhu

As the security landscape evolves over time, where thousands of species of malicious codes are seen every day, antivirus vendors strive to detect and classify malware families for efficient and effective responses against malware campaigns.…

Cryptography and Security · Computer Science 2016-06-08 Jae-wook Jang , Jiyoung Woo , Aziz Mohaisen , Jaesung Yun , Huy Kang Kim

The dose delivered to the planning target volume by proton beams is highly conformal, sparing organs at risk and normal tissues. New treatment planning systems adapted to spot scanning techniques have been recently proposed to…

Medical Physics · Physics 2022-05-18 François Smekens , Nicolas Freud , Bruno Sixou , Guillaume Beslon , Jean M Létang

Mathematical models are established tools to assist in outbreak response. They help characterise complex patterns in disease spread, simulate control options to assist public health authorities in decision-making, and longer-term…

We propose a new method to immunize populations or computer networks against epidemics which is more efficient than any method considered before. The novelty of our method resides in the way of determining the immunization targets. First we…

Physics and Society · Physics 2015-06-03 Christian M. Schneider , Tamara Mihaljev , Hans J. Herrmann

The development of therapeutic targets for COVID-19 treatment is based on the understanding of the molecular mechanism of pathogenesis. The identification of genes and proteins involved in the infection mechanism is the key to shed out…

Biomolecules · Quantitative Biology 2021-05-19 Jayanta Kumar Das , Swarup Roy , Pietro Hiram Guzzi

Environmental contaminant exposure can pose significant risks to human health. Therefore, evaluating the impact of this exposure is of great importance; however, it is often difficult because both the molecular mechanism of disease and the…

Molecular Networks · Quantitative Biology 2018-06-01 Midori Iida , Kazuhiro Takemoto

We expand Mendelian Randomization (MR) methodology to deal with randomly missing data on either the exposure or the outcome variable, and furthermore with data from nonindependent individuals (eg components of a family). Our method rests on…

Tuberculosis (TB) is one of the deadliest diseases worldwide, with 1,5 million fatalities every year along with potential devastating effects on society, families and individuals. To address this alarming burden, vaccines can play a…

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