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To predict the health effects of accidental or therapeutic radiation exposure, one must estimate the radiation dose that person received. A well-known ionising radiation biomarker, phosphorylated gamma-H2AX protein, is used to evaluate cell…

The plasmodium of Physarum polycephalum is a large single cell visible with the naked eye. When inoculated on a substrate with attractants and repellents the plasmodium develops optimal networks of protoplasmic tubes which span sites of…

Emerging Technologies · Computer Science 2013-10-24 Richard Mayne , David Patton , Ben de Lacy Costello , Andrew Adamatzky , Rosemary Camilla Patton

Background: Predictive, stable and interpretable gene signatures are generally seen as an important step towards a better personalized medicine. During the last decade various methods have been proposed for that purpose. However, one…

Genomics · Quantitative Biology 2013-05-28 Yupeng Cun , Holger Fröhlich

Accurate information about protein content in the organism is instrumental for a better understanding of human biology and disease mechanisms. While the presence of certain types of proteins can be life-threatening, the abundance of others…

Quantitative Methods · Quantitative Biology 2022-01-19 Dmytro Fishman

Correlated fermions are of high interest in condensed matter (Fermi liquids, Wigner molecules), cold atomic gases and dense plasmas. Here we propose a novel approach to path integral Monte Carlo (PIMC) simulations of strongly degenerate…

Quantum Gases · Physics 2016-01-15 Tobias Dornheim , Simon Groth , Alexey Filinov , Michael Bonitz

Malaria parasites pose a significant global health burden, causing widespread suffering and mortality. Detecting malaria infection accurately is crucial for effective treatment and control. However, existing automated detection techniques…

Computer Vision and Pattern Recognition · Computer Science 2024-12-18 Abraham G Taye , Sador Yemane , Eshetu Negash , Yared Minwuyelet , Moges Abebe , Melkamu Hunegnaw Asmare

Antimalarial drugs are a powerful tool for malaria control and elimination. Artemisinin-based combination therapies (ACTs) can reduce transmission when widely distributed in a campaign setting. Modelling mass antimalarial campaigns can…

Populations and Evolution · Quantitative Biology 2015-04-01 Jaline Gerardin , Philip Eckhoff , Edward A. Wenger

CRISPR-Cas is an adaptive immune mechanism that has been harnessed for a variety of genetic engineering applications: the Cas9 protein recognises a 2-5nt DNA motif, known as the PAM, and a programmable crRNA binds a target DNA sequence that…

Biological Physics · Physics 2021-01-06 Melia E. Bonomo

Online health communications often provide biased interpretations of evidence and have unreliable links to the source research. We tested the feasibility of a tool for matching webpages to their source evidence. From 207,538 eligible…

Information Retrieval · Computer Science 2020-08-20 Eliza Harrison , Paige Martin , Didi Surian , Adam G. Dunn

Filamentous phage, such as fd used in this study, are thread-shaped bacterial viruses. Their outer coat is a tube formed by thousands equal copies of the major coat protein pVIII. We constructed libraries of random peptides fused to all…

We apply convolutional neural networks to identify between malaria infected and non-infected segmented cells from the thin blood smear slide images. We optimize our model to find over 95% accuracy in malaria cell detection. We also apply…

Image and Video Processing · Electrical Eng. & Systems 2022-02-22 Tahsinur Rahman Talukdar , Mohammad Jaber Hossain , Tahmid H. Talukdar

Malaria is one of the deadliest diseases in the world, every year millions of people become victims of this disease and many even lose their lives. Medical professionals and the government could take accurate measures to protect the people…

Populations and Evolution · Quantitative Biology 2025-01-03 Adithya Rajnarayanan , Manoj Kumar , Abdessamad Tridane

As immunotherapies become standard cancer treatments, it is increasingly important to identify a patient's immune profile, which encompasses the activity of immune cells within the tumor microenvironment and the presence of specific…

Genomics · Quantitative Biology 2026-03-31 Soham Chatterjee

Global research efforts have been focused on the simultaneous improvement of the efficiency and sensitivity of malaria diagnosis in resource-limited settings and for the active case detection of asymptomatic infections. A recently developed…

In order to evaluate and develop mission concepts for a search for Terrestrial Exoplanets, we have prepared a list of potential target systems. In this paper we present and discuss the criteria for selecting potential target stars suitable…

Astrophysics · Physics 2015-05-13 L. Kaltenegger , C. Eiroa , C. V. M. Fridlund

Antimicrobial resistance (AMR) is projected to cause up to 10 million deaths annually by 2050, underscoring the urgent need for new antibiotics. Here we present ApexAmphion, a deep-learning framework for de novo design of antibiotics that…

Each and every biological function in living organism happens as a result of protein-protein interactions.The diseases are no exception to this. Identifying one or more proteins for a particular disease and then designing a suitable…

Computational Engineering, Finance, and Science · Computer Science 2015-07-31 Anupam Ghosh , Mainak Talukdar , Uttam Kumar Roy

Recent advances in generative biology have enabled the design of novel proteins, creating significant opportunities for drug discovery while also introducing new risks, including the potential development of synthetic bioweapons. Existing…

Quantitative Methods · Quantitative Biology 2025-09-04 Jonathan Feldman , Tal Feldman

A major part of membrane function is conducted by proteins, both integral and peripheral. Peripheral membrane proteins temporarily adhere to biological membranes, either to the lipid bilayer or to integral membrane proteins with…

Biomolecules · Quantitative Biology 2014-06-27 Katerina C. Nastou , Georgios N. Tsaousis , Kimon E. Kremizas , Zoi I. Litou , Stavros J. Hamodrakas

Background: Protein-protein interaction (PPI) network analyses are highly valuable in deciphering and understanding the intricate organisation of cellular functions. Nevertheless, the majority of available protein-protein interaction…

Molecular Networks · Quantitative Biology 2015-01-08 Oussema Souiai , Fatma Guerfali , Slimane Ben Miled , Christine Brun , Alia Benkahla