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In their recent comment, Cockell et al. argue that the habitability of an environment is fundamentally a binary property; that is to say, an environment can either support the metabolic processes of a given organism or not. The habitability…

Popular Physics · Physics 2020-04-15 René Heller

Interactions mediated by the cell membrane between inclusions, such as membrane proteins or antimicrobial peptides, play important roles in their biological activity. They also constitute a fascinating challenge for physicists, since they…

Biological Physics · Physics 2019-03-15 Anne-Florence Bitbol , Doru Constantin , Jean-Baptiste Fournier

In the present work we recall and extend the results of previous work concerning the time evolution of open quantum systems. We show how general properties of such systems are related to their structure properties, those of their…

Quantum Physics · Physics 2016-06-01 Tarek Khalil , Jean Richert

We discuss the role coarse-grained models play in the investigation of the structure and thermodynamics of bilayer membranes, and we place them in the context of alternative approaches. Because they reduce the degrees of freedom and employ…

Soft Condensed Matter · Physics 2009-11-11 Marcus Mueller , Kirill Katsov , Michael Schick

We give an explicit formula for the membrane potential of cells in terms of the intracellular and extracellular ionic concentrations, and derive equations for the ionic currents that flow through channels, exchangers and electrogenic pumps.…

Biological Physics · Physics 2007-05-23 L. P. Endresen , K. Hall , J. S. Hoye , J. Myrheim

Systems with time delay play an important role in modeling of many physical and biological processes. In this paper we describe generic properties of systems with time delay, which are related to the appearance and stability of periodic…

Chaotic Dynamics · Physics 2015-05-13 S. Yanchuk , P. Perlikowski

Unlike computation or the numerical analysis of differential equations, simulation does not have a well established conceptual and mathematical foundation. Simulation is an arguable unique union of modeling and computation. However,…

adap-org · Physics 2008-02-03 Steen Rasmussen , Christopher Barrett

One problem of non-crystalline condensed matter (soft matter) is creating the right equilibrium between elasticity and viscosity, referred to as viscoelasticity. Manifestations of that can be found in everyday live, where the…

Biological Physics · Physics 2015-08-17 Sebastian Jaksch , Olaf Holderer , Michael Ohl , Henrich Frielinghaus

Thanks to recent technological advances, it is now possible to track with an unprecedented precision and for long periods of time the movement patterns of many living organisms in their habitat. The increasing amount of data available on…

Populations and Evolution · Quantitative Biology 2015-05-19 Denis Boyer , Peter D. Walsh

It has long been suggested that the mid-latitude atmospheric circulation possesses what has come to be known as `weather regimes', loosely categorised as regions of phase space with above-average density and/or extended persistence. Their…

Atmospheric and Oceanic Physics · Physics 2022-07-13 Kristian Strommen , Matthew Chantry , Joshua Dorrington , Nina Otter

In an attempt to explain the uniqueness of the coding mechanism of living cells as contrasted with multi-species structure of ecosystems we examine two models of individuals with some replicative properties. In the first model the system…

Statistical Mechanics · Physics 2009-10-31 A. Lipowski

In biological and engineering systems, structure, function and dynamics are highly coupled. Such interactions can be naturally and compactly captured via tensor based state space dynamic representations. However, such representations are…

Optimization and Control · Mathematics 2019-12-30 Can Chen , Amit Surana , Anthony Bloch , Indika Rajapakse

Time crystals, a unique non-equilibrium quantum phenomenon with promising applications in current quantum technologies, mark a significant advance in quantum mechanics. Although traditionally studied in atom-cavity and optical lattice…

Quantum Physics · Physics 2024-10-07 Subhajit Sarkar , Yonatan Dubi

In this review we summarize theoretical progress in the field of active matter, placing it in the context of recent experiments. Our approach offers a unified framework for the mechanical and statistical properties of living matter:…

Soft Condensed Matter · Physics 2012-07-13 M. C. Marchetti , J. -F. Joanny , S. Ramaswamy , T. B. Liverpool , J. Prost , Madan Rao , R. Aditi Simha

The organization of live cells into tissues and their subsequent biological function involves inter-cell mechanical interactions, which are mediated by their elastic environment. To model this interaction, we consider cells as spherical…

Soft Condensed Matter · Physics 2024-02-20 Roman Golkov , Yair Shokef

Spatiotemporal patterns are common in biological systems. For electrically-coupled cells previous studies of pattern formation have mainly used external forcing as the main bifurcation parameter. The purpose of this paper is to show that…

Dynamical Systems · Mathematics 2021-11-02 H. O. Fatoyinbo , R. G. Brown , D. J. W. Simpson , B. van Brunt

Under typical PEM fuel cell operating conditions, part of membrane electrode assembly is subjected to humidity cycling due to variation of inlet gas RH and/or flow rate. Cyclic membrane hydration/dehydration would cause cyclic…

Animals exploit time to survive in the world. Temporal information is required for higher-level cognitive abilities such as planning, decision making, communication, and effective cooperation. Since time is an inseparable part of cognition,…

Artificial Intelligence · Computer Science 2020-12-29 Hamit Basgol , Inci Ayhan , Emre Ugur

Active matter encompasses systems whose individual consituents dissipate energy to exert propelling forces on their environment. This rapidly developing field harbors a dynamical phenomenology with no counterpart in passive systems. The…

Statistical Mechanics · Physics 2023-12-19 Jérémy O'Byrne , Yariv Kafri , Julien Tailleur , Frédéric van Wijland

While cognitive representations of an environment can last for days and even months, the synaptic architecture of the neuronal networks that underlie these representations constantly changes due to various forms of synaptic and structural…

Neurons and Cognition · Quantitative Biology 2016-06-10 Andrey Babichev , Yuri Dabaghian