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A unified clustering approach that can estimate number of clusters and produce clustering against this number simultaneously is proposed. Average silhouette width (ASW) is a widely used standard cluster quality index. A distance based…

Methodology · Statistics 2021-03-02 Fatima Batool

Traditional clustering methods are limited when dealing with huge and heterogeneous groups of gene expression data, which motivates the development of bi-clustering methods. Bi-clustering methods are used to mine bi-clusters whose subsets…

Computer Vision and Pattern Recognition · Computer Science 2020-05-13 Kaijie Xu , Witold Pedrycz , Zhiwu Li , Yinghui Quan , Weike Nie

Deep learning has become the mainstream methodological choice for analyzing and interpreting whole-slide digital pathology images (WSIs). It is commonly assumed that tumor regions carry most predictive information. In this paper, we…

Quantitative Methods · Quantitative Biology 2022-04-26 Zihan Chen , Xingyu Li , Miaomiao Yang , Hong Zhang , Xu Steven Xu

Cluster analysis methods seek to partition a data set into homogeneous subgroups. It is useful in a wide variety of applications, including document processing and modern genetics. Conventional clustering methods are unsupervised, meaning…

Methodology · Statistics 2014-07-11 Eric Bair

Modeling of high-dimensional data is very important to categorize different classes. We develop a new mixture model called Multinomial cluster-weighted model (MCWM). We derive the identifiability of a general class of MCWM. We estimate the…

Methodology · Statistics 2022-08-25 Kehinde Olobatuyi , Oludare Ariyo

Clustering methods are popular for revealing structure in data, particularly in the high-dimensional setting common to contemporary data science. A central statistical question is, "are the clusters really there?" One pioneering method in…

Methodology · Statistics 2023-08-28 Thomas H. Keefe , J. S. Marron

Matrix valued data has become increasingly prevalent in many applications. Most of the existing clustering methods for this type of data are tailored to the mean model and do not account for the dependence structure of the features, which…

Machine Learning · Statistics 2023-12-07 Inbeom Lee , Siyi Deng , Yang Ning

A widely used approach for extracting information from gene expression data employ the construction of a gene co-expression network and the subsequent application of algorithms that discover network structure. In particular, a common goal…

Genomics · Quantitative Biology 2024-08-20 Niloofar Aghaieabiane , Ioannis Koutis

The compact genetic algorithm is an Estimation of Distribution Algorithm for binary optimisation problems. Unlike the standard Genetic Algorithm, no cross-over or mutation is involved. Instead, the compact Genetic Algorithm uses a virtual…

Neural and Evolutionary Computing · Computer Science 2017-08-08 Simon M. Lucas , Jialin Liu , Diego Pérez-Liébana

We consider the problem of clustering a set of high-dimensional data points into sets of low-dimensional linear subspaces. The number of subspaces, their dimensions, and their orientations are unknown. We propose a simple and low-complexity…

Information Theory · Computer Science 2013-03-18 Reinhard Heckel , Helmut Bölcskei

Machine learning models encounter Out-of-Distribution (OoD) errors when the data seen at test time are generated from a different stochastic generator than the one used to generate the training data. One proposal to scale OoD detection to…

Machine Learning · Statistics 2019-05-27 Hyunsun Choi , Eric Jang , Alexander A. Alemi

Unsupervised learning of disease subtypes from multi-omics data presents a significant opportunity for advancing personalized medicine. We introduce OmicsCL, a modular contrastive learning framework that jointly embeds heterogeneous omics…

Machine Learning · Computer Science 2025-05-02 Atahan Karagoz

Semi-implicit variational inference (SIVI) enhances the expressiveness of variational families through hierarchical semi-implicit distributions, but the intractability of their densities makes standard ELBO-based optimization biased. Recent…

Machine Learning · Statistics 2026-01-21 Longlin Yu , Ziheng Cheng , Shiyue Zhang , Cheng Zhang

Deep clustering outperforms conventional clustering by mutually promoting representation learning and cluster assignment. However, most existing deep clustering methods suffer from two major drawbacks. First, most cluster assignment methods…

Computer Vision and Pattern Recognition · Computer Science 2022-02-23 Hanxuan Wang , Na Lu , Qinyang Liu

The neural ordinary differential equation (neural ODE) model has attracted increasing attention in time series analysis for its capability to process irregular time steps, i.e., data are not observed over equally-spaced time intervals. In…

Machine Learning · Computer Science 2021-07-23 Mingyuan Bai , S. T. Boris Choy , Junping Zhang , Junbin Gao

In several application domains, high-dimensional observations are collected and then analysed in search for naturally occurring data clusters which might provide further insights about the nature of the problem. In this paper we describe a…

Machine Learning · Statistics 2012-03-07 Brian McWilliams , Giovanni Montana

Feature selection for predictive analytics is the problem of identifying a minimal-size subset of features that is maximally predictive of an outcome of interest. To apply to molecular data, feature selection algorithms need to be scalable…

Machine Learning · Statistics 2020-04-02 Michail Tsagris , Zacharias Papadovasilakis , Kleanthi Lakiotaki , Ioannis Tsamardinos

We introduce a novel framework for clustering a collection of tall matrices based on their column spaces, a problem we term Subspace Clustering of Subspaces (SCoS). Unlike traditional subspace clustering methods that assume vectorized data,…

Machine Learning · Computer Science 2025-09-30 Paris A. Karakasis , Nicholas D. Sidiropoulos

As language models become more general purpose, increased attention needs to be paid to detecting out-of-distribution (OOD) instances, i.e., those not belonging to any of the distributions seen during training. Existing methods for…

Machine Learning · Computer Science 2024-07-19 Aryan Gulati , Xingjian Dong , Carlos Hurtado , Sarath Shekkizhar , Swabha Swayamdipta , Antonio Ortega

Clustering is one of the most fundamental tools in data science and machine learning, and k-means clustering is one of the most common such methods. There is a variety of approximate algorithms for the k-means problem, but computing the…

Optimization and Control · Mathematics 2024-02-22 Martin Ryner , Jan Kronqvist , Johan Karlsson