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Over the past decade, neural networks have been successful at making predictions from biological sequences, especially in the context of regulatory genomics. As in other fields of deep learning, tools have been devised to extract features…

Genomics · Quantitative Biology 2022-12-27 Antoine Villié , Philippe Veber , Yohann de Castro , Laurent Jacob

In this paper a novel biclustering algorithm based on artificial intelligence (AI) is introduced. The method called EBIC aims to detect biologically meaningful, order-preserving patterns in complex data. The proposed algorithm is probably…

Machine Learning · Computer Science 2018-07-27 Patryk Orzechowski , Moshe Sipper , Xiuzhen Huang , Jason H. Moore

In this paper we present a new model and an algorithm for unsupervised clustering of 2-D data such as images. We assume that the data comes from a union of multilinear subspaces (UOMS) model, which is a specific structured case of the much…

Information Theory · Computer Science 2015-12-22 Eric Kernfeld , Nathan Majumder , Shuchin Aeron , Misha Kilmer

Minimum sum-of-squares clustering (MSSC) is a widely used clustering model, of which the popular K-means algorithm constitutes a local minimizer. It is well known that the solutions of K-means can be arbitrarily distant from the true MSSC…

Machine Learning · Computer Science 2018-12-21 Daniel Gribel , Thibaut Vidal

We show that the signal-processing paradigm known as compressed sensing (CS) is applicable to genome-wide association studies (GWAS) and genomic selection (GS). The aim of GWAS is to isolate trait-associated loci, whereas GS attempts to…

Genomics · Quantitative Biology 2014-05-13 Shashaank Vattikuti , James J. Lee , Christopher C. Chang , Stephen D. H. Hsu , Carson C. Chow

In this paper, we present a kernel subspace clustering method that can handle non-linear models. In contrast to recent kernel subspace clustering methods which use predefined kernels, we propose to learn a low-rank kernel matrix, with which…

Computer Vision and Pattern Recognition · Computer Science 2019-01-28 Pan Ji , Ian Reid , Ravi Garg , Hongdong Li , Mathieu Salzmann

Under the framework of spectral clustering, the key of subspace clustering is building a similarity graph which describes the neighborhood relations among data points. Some recent works build the graph using sparse, low-rank, and…

Machine Learning · Computer Science 2017-05-17 Xi Peng , Huajin Tang , Lei Zhang , Zhang Yi , Shijie Xiao

Whole slide image (WSI) classification requires repetitive zoom-in and out for pathologists, as only small portions of the slide may be relevant to detecting cancer. Due to the lack of patch-level labels, multiple instance learning (MIL) is…

Computer Vision and Pattern Recognition · Computer Science 2023-11-30 Seongho Keum , Sanghyun Kim , Soojeong Lee , Juho Lee

This manuscript presents a comprehensive analysis of predictive modeling optimization in managed Wi-Fi networks through the integration of clustering algorithms and model evaluation techniques. The study addresses the challenges of…

Signal Processing · Electrical Eng. & Systems 2026-03-24 Gianluca Fontanesi , Luca Barbieri , Lorenzo Galati Giordano , Alfonso Fernandez Duran , Thorsten Wild

A genetic algorithm is suitable for exploring large search spaces as it finds an approximate solution. Because of this advantage, genetic algorithm is effective in exploring vast and unknown space such as molecular search space. Though the…

Neural and Evolutionary Computing · Computer Science 2021-12-24 Yurim Lee , Gydam Choi , Minsung Yoon , Cheongwon Kim

Data mining focuses on discovering interesting, non-trivial and meaningful information from large datasets. Data clustering is one of the unsupervised and descriptive data mining task which group data based on similarity features and…

Neural and Evolutionary Computing · Computer Science 2023-05-09 Pitawelayalage Dasun Dileepa Pitawela , Gamage Upeksha Ganegoda

We consider the problem of clustering noisy high-dimensional data points into a union of low-dimensional subspaces and a set of outliers. The number of subspaces, their dimensions, and their orientations are unknown. A probabilistic…

Information Theory · Computer Science 2013-07-19 Reinhard Heckel , Helmut Bölcskei

Classification in the dissimilarity space has become a very active research area since it provides a possibility to learn from data given in the form of pairwise non-metric dissimilarities, which otherwise would be difficult to cope with.…

Dimension reduction is widely regarded as an effective way for decreasing the computation, storage and communication loads of data-driven intelligent systems, leading to a growing demand for statistical methods that allow analysis (e.g.,…

Computer Vision and Pattern Recognition · Computer Science 2019-08-23 Guangcan Liu , Zhao Zhang , Qingshan Liu , Kongkai Xiong

Subspace clustering algorithms are notorious for their scalability issues because building and processing large affinity matrices are demanding. In this paper, we introduce a method that simultaneously learns an embedding space along…

Computer Vision and Pattern Recognition · Computer Science 2018-11-06 Tong Zhang , Pan Ji , Mehrtash Harandi , Richard Hartley , Ian Reid

Extracting associations that recur across multiple studies while controlling the false discovery rate is a fundamental challenge. Here, we consider an extension of Efron's single-study two-groups model to allow joint analysis of multiple…

Methodology · Statistics 2019-01-14 David Amar , Ron Shamir , Daniel Yekutieli

Time series are ubiquitous in domains ranging from medicine to marketing and finance. Frequent Pattern Mining (FPM) from a time series has thus received much attention. Recently, it has been studied under the order-preserving (OP) matching…

Data Structures and Algorithms · Computer Science 2024-12-02 Ling Li , Wiktor Zuba , Grigorios Loukides , Solon P. Pissis , Maria Matsangidou

This paper is concerned with data clustering to separate clusters based on the connectivity principle for categorizing similar and dissimilar data into different groups. Although classical clustering algorithms such as K-means are efficient…

Machine Learning · Computer Science 2023-11-01 Sayed Pedram Haeri Boroujeni , Elnaz Pashaei

Unsupervised classification called clustering is a process of organizing objects into groups whose members are similar in some way. Clustering of uncertain data objects is a challenge in spatial data bases. In this paper we use Probability…

Databases · Computer Science 2013-12-10 Ramachandra Rao Kurada

This paper considers the problem of clustering a collection of unlabeled data points assumed to lie near a union of lower-dimensional planes. As is common in computer vision or unsupervised learning applications, we do not know in advance…

Information Theory · Computer Science 2013-01-31 Mahdi Soltanolkotabi , Emmanuel J. Candés
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