Related papers: Minimum de Bruijn Sequence in a Language with Forb…
This article is concerned with automating the decreasing diagrams technique of van Oostrom for establishing confluence of term rewrite systems. We study abstract criteria that allow to lexicographically combine labelings to show local…
An Eulerian-minor of an Eulerian graph is obtained from an Eulerian subgraph of the Eulerian graph by contraction. The Eulerian-minor operation preserves Eulerian properties of graphs and moreover Eulerian graphs are well-quasi-ordered…
The focus of this work is to show how to combine Zech's logarithms and each of the cycle joining and cross-join pairing methods to construct binary de Bruijn sequences of any order. A basic implementation is supplied as a proof-of-concept.…
Chordal graphs are the graphs in which every cycle of length at least four has a chord. A set $S$ is a vertex separator for vertices $a$ and $b$ if the removal of $S$ of the graph separates $a$ and $b$ into distinct connected components. A…
In the recent research of data mining, frequent structures in a sequence of graphs have been studied intensively, and one of the main concern is changing structures along a sequence of graphs that can capture dynamic properties of data. On…
A subcycle of an Eulerian circuit is a sequence of edges that are consecutive in the circuit and form a cycle. We characterise the quartic planar graphs that admit Eulerian circuits avoiding 3-cycles and 4-cycles. From this, it follows that…
We study the Laplacian of the undirected De Bruijn graph over an alphabet $A$ of order $k$. While the eigenvalues of this Laplacian were found in 1998 by Delorme and Tillich [1], an explicit description of its eigenvectors has remained…
The family of graphs of reduced words of a certain subcollection of permutations in the union $\cup_{n\geq 4}\frak{S}_{n}$ of symmetic groups is investigated. The subcollection is characterised by the hook cycle type $(n-2,1,1)$ with…
In a finite undirected simple graph, a {\it chordless cycle} is an induced subgraph which is a cycle. We propose two algorithms to enumerate all chordless cycles of such a graph. Compared to other similar algorithms, the proposed algorithms…
This paper formulates a novel problem on graphs: find the minimal subset of edges in a fully connected graph, such that the resulting graph contains all spanning trees for a set of specifed sub-graphs. This formulation is motivated by an…
Decomposing an Eulerian graph into a minimum respectively maximum number of edge disjoint cycles is an NP-complete problem. We prove that an Eulerian graph decomposes into a unique number of cycles if and only if it does not contain two…
The concept of symbolic sequences play important role in study of complex systems. In the work we are interested in ultrametric structure of the set of cyclic sequences naturally arising in theory of dynamical systems. Aimed at construction…
We generalize the notion of a de Bruijn sequence to a "multi de Bruijn sequence": a cyclic or linear sequence that contains every k-mer over an alphabet of size q exactly m times. For example, over the binary alphabet {0,1}, the cyclic…
A graph is circle if its vertices are in correspondence with a family of chords in a circle in such a way that every two distinct vertices are adjacent if and only if the corresponding chords have nonempty intersection. Even though there…
Let $B$ be a set of Eulerian subgraphs of a graph $G$. We say $B$ forms a $k$-basis if it is a minimum set that generates the cycle space of $G$, and any edge of $G$ lies in at most $k$ members of $B$. The basis number of a graph $G$,…
Aligning a sequence to a walk in a labeled graph is a problem of fundamental importance to Computational Biology. For finding a walk in an arbitrary graph with $|E|$ edges that exactly matches a pattern of length $m$, a lower bound based on…
We study the problems of finding a minimum cycle basis (a minimum weight set of cycles that form a basis for the cycle space) and a minimum homology basis (a minimum weight set of cycles that generates the $1$-dimensional…
We propose a construction of de Bruijn sequences by the cycle joining method from linear feedback shift registers (LFSRs) with arbitrary characteristic polynomial $f(x)$. We study in detail the cycle structure of the set $\Omega(f(x))$ that…
A graph in a certain graph class is called minimizing if the least eigenvalue of the adjacency matrix of the graph attains the minimum among all graphs in that class. Bell {\it et al.} have characterized the minimizing graphs in the class…
We consider the problem of immersing the complete digraph on t vertices in a simple digraph. For Eulerian digraphs, we show that such an immersion always exists whenever minimum degree is at least t(t-1), and for t at most 4 minimum degree…