Related papers: Minimum de Bruijn Sequence in a Language with Forb…
In this article, we show how to transform a colored de Bruijn graph (dBG) into a practical index for processing massive sets of sequencing reads. Similar to previous works, we encode an instance of a colored dBG of the set using BOSS and a…
In this paper we give a lower bound for the least distortion embedding of a distance regular graph into Euclidean space. We use the lower bound for finding the least distortion for Hamming graphs, Johnson graphs, and all strongly regular…
A conjecture by Lichiardopol states that for every $k \ge 1$ there exists an integer $g(k)$ such that every digraph of minimum out-degree at least $g(k)$ contains $k$ vertex-disjoint directed cycles of pairwise distinct lengths. Motivated…
We prove that a connected graph contains a circuit---a closed walk that repeats no edges---through any $k$ prescribed edges if and only if it contains no odd cut of size at most $k$.
We investigate the Minimum Eccentricity Shortest Path problem in some structured graph classes. It asks for a given graph to find a shortest path with minimum eccentricity. Although it is NP-hard in general graphs, we demonstrate that a…
We prove that all $1$-vertex spatial graphs with adequate diagrams have minimal crossing number, and that spatial graph diagrams obtained by replacing vertices and edges of a planar embedded graph by minimal crossing link or spatial graph…
A graph $H$ is an \emph{isometric} subgraph of $G$ if $d_H(u,v)= d_G(u,v)$, for every pair~$u,v\in V(H)$. A graph is \emph{distance preserving} if it has an isometric subgraph of every possible order. A graph is \emph{sequentially distance…
One of the fundamental ways to construct De Bruijn sequences is by using a shift-rule. A shift-rule receives a word as an argument and computes the symbol that appears after it in the sequence. An optimal shift-rule for an $(n,k)$-De Bruijn…
We initiate the algorithmic study of retracting a graph into a cycle in the graph, which seeks a mapping of the graph vertices to the cycle vertices, so as to minimize the maximum stretch of any edge, subject to the constraint that the…
Inspired by artistic practices such as beadwork and himmeli, we study the problem of threading a single string through a set of tubes, so that pulling the string forms a desired graph. More precisely, given a connected graph (where edges…
We introduce a decomposition method for the distributed calculation of exact Euclidean Minimum Spanning Trees in high dimensions (where sub-quadratic algorithms are not effective), or more generalized geometric-minimum spanning trees of…
Negative avoiding sequences of span $n$ are periodic sequences of elements from $\mathbb{Z}_k$ for some $k$ with the property that no $n$-tuple occurs more than once in a period and if an $n$-tuple does occur then its negative does not.…
We classify twenty-one Indo-European languages starting from written text. We use neural networks in order to define a distance among different languages, construct a dendrogram and analyze the ultrametric structure that emerges. Four or…
We prove that the minimum number of Hamilton cycles in a hamiltonian threshold graph of order $n$ is $2^{\lfloor (n-3)/2\rfloor}$ and this minimum number is attained uniquely by the graph with degree sequence $n-1,n-1,n-2,\ldots,\lceil…
A universal cycle for a set S of combinatorial objects is a cyclic sequence of length |S|that contains a representation of each element in S exactly once as a substring. If S is the set of k-subsets of [n] = {1, 2, . . . , n}, it is…
Let $D$ be a strongly connected directed graph of order $n\geq 4$ which satisfies the following condition (*): for every pair of non-adjacent vertices $x, y$ with a common in-neighbour $d(x)+d(y)\geq 2n-1$ and $min \{ d(x), d(y)\}\geq n-1$.…
Given a string $w$, another string $v$ is said to be a subsequence of $w$ if $v$ can be obtained from $w$ by removing some of its letters; on the other hand, $v$ is called an absent subsequence of $w$ if $v$ is not a subsequence of $w$. The…
We study shortest paths and their distances on a subset of a Euclidean space, and their approximation by their equivalents in a neighborhood graph defined on a sample from that subset. In particular, we recover and extend the results of…
It is well known that every sufficiently large connected graph has, as an induced subgraph, $K_n$, $K_{1,n}$, or an $n$-vertex path. A 2023 paper of Allred, Ding, and Oporowski identified a set of unavoidable induced subgraphs of…
Borradaile et al. (2017) investigated orientations of an undirected graph in which the sequence of in-degrees of the nodes is lexicographically minimal, which we call decreasingly minimal (=dec-min). They proved that an orientation is…