English

Translocation of Polymers through Nanopores at Weak External Field, Direct Approach with Monte Carlo Simulations

Soft Condensed Matter 2008-06-18 v1 Statistical Mechanics

Abstract

I did off-lattice 3D Monte Carlo simulations for polymer translocation through a narrow pore at low external field, trying to be as close to a direct approach as possible. The process was found non equilibrium globally, but dynamics of the monomers close to the pore (the fold) was found close to quasi equilibrium. I observed a tension (or pressure) buildup near the pore, and subdiffusion for the displacement of the middle monomer in the pore, as reported in the literature. I did not find the distribution of the reaction coordinate after some time of free diffusion predicted by the fractional diffusion equation.

Keywords

Cite

@article{arxiv.0806.2849,
  title  = {Translocation of Polymers through Nanopores at Weak External Field, Direct Approach with Monte Carlo Simulations},
  author = {Stanislav Kotsev},
  journal= {arXiv preprint arXiv:0806.2849},
  year   = {2008}
}

Comments

submitted to JCP, 24 pages, 8 figures