English

Polymer translocation through nanopore assisted by an environment of active rods

Soft Condensed Matter 2021-02-03 v1

Abstract

We use a combination of computer simulations and iso-flux tension propagation (IFTP) theory to investigate translocation dynamics of a flexible linear polymer through a nanopore into an environment composed of repulsive active rods in 2D. We demonstrate that the rod activity induces a crowding effect on the polymer, leading to a time-dependent net force that facilitates translocation into the active environment. Incorporating this force into the IFTP theory for pore-driven translocation allows us to characterise translocation dynamics in detail and derive a scaling form for the average translocation time as τ~L~rν/F~SP\tilde{\tau} \sim \tilde{L}_{\textrm{r}}^{\nu} / \tilde{F}_{\textrm{SP}} , where L~r\tilde{L}_{\textrm{r}} and F~SP\tilde{F}_{\textrm{SP}} are the rod length and self-propelling force acting on the rods, respectively, and ν\nu is the Flory exponent.

Keywords

Cite

@article{arxiv.2011.04621,
  title  = {Polymer translocation through nanopore assisted by an environment of active rods},
  author = {Hamidreza Khalilian and Jalal Sarabadani and Tapio Ala-Nissila},
  journal= {arXiv preprint arXiv:2011.04621},
  year   = {2021}
}