English

Polymer (imperfect) single-file diffusion: A phase diagram

Soft Condensed Matter 2025-05-20 v1 Biological Physics

Abstract

We use Langevin dynamics (LD) simulations to investigate single-file diffusion (SFD) in a dilute solution of flexible linear polymers inside a narrow tube with periodic boundary conditions (a torus). The transition from SFD, where the time (t) dependence of the mean-square displacement scales like x2t1/2\langle x^2\rangle \sim t^{1/2}, to normal diffusion with x2t\langle x^2 \rangle \sim t, is studied as a function of the system parameters, such as the size and concentration of the polymer chains and the width of the tube. We propose a phase diagram describing different diffusion regimes. In particular, we highlight the fact that there are two different pathways to normal long-time diffusion. We also map this problem onto a one-dimensional Lattice Monte Carlo model where the diffusing object represents the polymer center of mass. Possible extensions of this work to polydisperse polymer solutions, one-dimensional electrophoresis and DNA mapping are discussed.

Keywords

Cite

@article{arxiv.2505.12164,
  title  = {Polymer (imperfect) single-file diffusion: A phase diagram},
  author = {Hanyang Wang and Gary W. Slater},
  journal= {arXiv preprint arXiv:2505.12164},
  year   = {2025}
}

Comments

11 pages, 12 figures

R2 v1 2026-07-01T02:19:00.948Z