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GlobDB: A comprehensive species-dereplicated microbial genome resource

Genomics 2025-06-16 v1
Authors: Daan R. Speth , Nick Pullen , Samuel T. N. Aroney , Benjamin L. Coltman , Jay T. Osvatic , Ben J. Woodcroft , Thomas Rattei , Michael Wagner
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Abstract

Over the past years, substantial numbers of microbial species' genomes have been deposited outside of conventional INSDC databases. The GlobDB aggregates 14 independent genomic catalogues to provide a comprehensive database of species-dereplicated microbial genomes, with consistent taxonomy, annotations, and additional analysis resources. The GlobDB is available at https://globdb.org/.

Cite

@article{arxiv.2506.11896,
  title  = {GlobDB: A comprehensive species-dereplicated microbial genome resource},
  author = {Daan R. Speth and Nick Pullen and Samuel T. N. Aroney and Benjamin L. Coltman and Jay T. Osvatic and Ben J. Woodcroft and Thomas Rattei and Michael Wagner},
  journal= {arXiv preprint arXiv:2506.11896},
  year   = {2025}
}

Comments

11 pages (including references), 1 table, 0 figures

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