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Many real-world networks, including nervous systems, exhibit meso-scale structure. This means that their elements can be grouped into meaningful sub-networks. In general, these sub-networks are unknown ahead of time and must be "discovered"…

神经元与认知 · 定量生物学 2020-11-16 Richard F. Betzel

We present a new layout algorithm for complex networks that combines a multi-scale approach for community detection with a standard force-directed design. Since community detection is computationally cheap, we can exploit the multi-scale…

物理与社会 · 物理学 2015-03-13 Oliver Dürr , Arnd Brandenburg

Complex real-world networks commonly reveal characteristic groups of nodes like communities and modules. These are of value in various applications, especially in the case of large social and information networks. However, while numerous…

社会与信息网络 · 计算机科学 2013-12-30 Lovro Šubelj , Marko Bajec

In this paper, we present a survey of the use of graph theoretical techniques in Biology. In particular, we discuss recent work on identifying and modelling the structure of bio-molecular networks, as well as the application of centrality…

分子网络 · 定量生物学 2007-05-23 Oliver Mason , Mark Verwoerd

Networks are a fundamental model of complex systems throughout the sciences, and network datasets are typically analyzed through lower-order connectivity patterns described at the level of individual nodes and edges. However, higher-order…

社会与信息网络 · 计算机科学 2018-02-21 Austin R. Benson

Social network analysis is a popular discipline among the social and behavioural sciences, in which the relationships between different social entities are modelled as a network. One of the most popular problems in social network analysis…

社会与信息网络 · 计算机科学 2022-08-30 Javier Fumanal-Idocin , Oscar Cordón , María Minárová , Amparo Alonso-Betanzos , Humberto Bustince

A multiplex network models different modes of interaction among same-type entities. In this article we provide a taxonomy of community detection algorithms in multiplex networks. We characterize the different algorithms based on various…

社会与信息网络 · 计算机科学 2021-01-21 Matteo Magnani , Obaida Hanteer , Roberto Interdonato , Luca Rossi , Andrea Tagarelli

Community detection, the decomposition of a graph into essential building blocks, has been a core research topic in network science over the past years. Since a precise notion of what constitutes a community has remained evasive, community…

社会与信息网络 · 计算机科学 2017-02-17 Michael T. Schaub , Jean-Charles Delvenne , Martin Rosvall , Renaud Lambiotte

Modeling structure in complex networks using Bayesian non-parametrics makes it possible to specify flexible model structures and infer the adequate model complexity from the observed data. This paper provides a gentle introduction to…

机器学习 · 统计学 2013-12-23 Mikkel N. Schmidt , Morten Mørup

A generalization of modularity, called block modularity, is defined. This is a quality function which evaluates a label assignment against an arbitrary block pattern. Therefore, unlike standard modularity or its variants, arbitrary network…

物理与社会 · 物理学 2023-03-01 Rudy Arthur

To comprehend the multipartite organization of large-scale biological and social systems, we introduce a new information theoretic approach that reveals community structure in weighted and directed networks. The method decomposes a network…

物理与社会 · 物理学 2008-02-13 M. Rosvall , C. T. Bergstrom

The dynamics of diffusion in complex networks are widely studied to understand how entities, such as information, diseases, or behaviors, spread in an interconnected environment. Complex networks often present community structure, and tools…

物理与社会 · 物理学 2025-12-09 Alina Dubovskaya , Caroline B. Pena , David J. P. O'Sullivan

Overlapping communities are key characteristics of the structure and function analysis of complex networks. Shared or overlapping nodes within overlapping communities can form either subcommunities or act as intersections between larger…

社会与信息网络 · 计算机科学 2025-12-19 Vesa Kuikka , Kosti Koistinen , Kimmo K Kaski

Multiplex networks are a type of multilayer network in which entities are connected to each other via multiple types of connections. We propose a method, based on computing pairwise similarities between layers and then doing community…

物理与社会 · 物理学 2017-09-20 Ta-Chu Kao , Mason A. Porter

The organizational structure of a network is investigated with a simulated precipitation model which does not make use of prior knowledge about the community structure of the network. The result is presented as a structure profile through…

材料科学 · 物理学 2009-09-24 Zhenggang Wang , Kwok Yip Szeto

We construct a novel class of stochastic blockmodels using Bayesian nonparametric mixtures. These model allows us to jointly estimate the structure of multiple networks and explicitly compare the community structures underlying them, while…

统计方法学 · 统计学 2016-06-17 Perla Reyes , Abel Rodriguez

Complex networks contain various interactions among similar or different entities. These kinds of networks are called multi-relational networks, in which each layer corresponds to a special type of interaction. Multi-relational networks are…

社会与信息网络 · 计算机科学 2021-04-02 Zahra Roozbahani , Hanif Emamgholizadeh , Jalal Rezaeenour , Mahshid Hajialikhani

A general scheme for detecting and analyzing topological patterns in large complex networks is presented. In this scheme the network in question is compared with its properly randomized version that preserves some of its low-level…

统计力学 · 物理学 2008-03-25 Sergei Maslov , Kim Sneppen , Alexei Zaliznyak

Many physical, biological, and social phenomena can be described by cascades taking place on a network. Often, the activity can be empirically observed, but not the underlying network of interactions. In this paper we offer three…

社会与信息网络 · 计算机科学 2017-07-24 Sushrut Ghonge , Dervis Can Vural

One of the main tasks of post-genomic informatics is to systematically investigate all molecules and their interactions within a living cell so as to understand how these molecules and the interactions between them relate to the function of…

分子网络 · 定量生物学 2007-05-23 Jing Zhao , Hong Yu , Jianhua Luo , Z. W. Cao , Yi-Xue Li
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