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We study a minimal model of a crawling eukaryotic cell with a chemical polarity controlled by a reaction-diffusion mechanism describing Rho GTPase dynamics. The size, shape, and speed of the cell emerge from the combination of the chemical…

生物物理 · 物理学 2017-01-11 Brian A. Camley , Yanxiang Zhao , Bo Li , Herbert Levine , Wouter-Jan Rappel

The bacterial flagellar motor is a highly efficient rotary machine used by many bacteria to propel themselves. It has recently been shown that at low speeds its rotation proceeds in steps [Sowa et al. (2005) Nature 437, 916--919]. Here we…

生物物理 · 物理学 2009-10-25 Thierry Mora , Howard Yu , Yoshiyuki Sowa , Ned S. Wingreen

The plasma membrane of human red blood cells consists of a lipid bilayer attached to a regular network of underlying cytoskeletal polymers. We model this system at a dynamic coarse-grained level, treating the bilayer as an elastic sheet and…

亚细胞过程 · 定量生物学 2009-11-13 Rui Zhang , Frank L. H. Brown

We use moving light patterns to control the motion of {\it Escherichia coli} bacteria whose motility is photo-activated. Varying the pattern speed controls the magnitude and direction of the bacterial flux, and therefore the accumulation of…

Certain bacteria form filamentous colonies when the cells fail to separate after dividing. In Bacillus subtilis, Bacillus thermus, and cyanobacteria, the filaments can wrap into complex supercoiled structures as the cells grow. The…

软凝聚态物质 · 物理学 2010-05-26 Charles W. Wolgemuth , Raymond E. Goldstein , Thomas R. Powers

A thin-walled tube, e.g., a drinking straw, manifests an instability when bent by localizing the curvature change in a small region. This instability has been extensively studied since the seminal work of Brazier nearly a century ago.…

软凝聚态物质 · 物理学 2022-02-03 Luyi Qiu , John W. Hutchinson , Ariel Amir

We study the buckling of an idealized, semiflexible filament along whose contour magnetic moments are placed. {We give analytic expressions for the critical stiffness of the filament below which it buckles due to the magnetic compression.…

软凝聚态物质 · 物理学 2017-10-10 Horst-Holger Boltz , Stefan Klumpp

A novel robust mechanism for the generation of "trapping states" is shown to exist in the coupling of a two-level system with an oscillator, which is based on nonlinearities in the laser-induced vibronic coupling. This mechanism is…

量子物理 · 物理学 2007-05-23 S. Wallentowitz , W. Vogel , P. E. Toschek

We analyze both the static and dynamic fluctuation spectrum of the red-blood cell in a unified manner, using a simple model of the composite membrane. In this model, the two-dimensional spectrin network that forms the cytoskeleton is…

软凝聚态物质 · 物理学 2007-05-23 N. Gov , A. G. Zilman , S. Safran

The influence of initial shape imperfections on the post-buckling and translational behavior of encapsulated microbubbles is investigated subject to acoustic excitation in an unbounded flow. Bifurcation analysis reveals that imperfections…

流体动力学 · 物理学 2025-08-26 Maria Vlachomitrou , Georges Chabouh , Alkmini Lytra , Nikos Pelekasis

Liquid crystal layers sandwiched between a reference plate and a photosensitive substrate were investigated. We focused on the reverse geometry, where the cell was illuminated by a laser beam from the reference side. In planar cells…

软凝聚态物质 · 物理学 2015-06-18 István Jánossy , Katalin Fodor-Csorba , Anikó Vajda , Tibor Tóth-Katona

We provide a detailed study of the interplay between the different interactions which appear in the Brownian motion of a micronsized sphere immersed in a viscoelastic fluid measured with optical trapping interferometry. To explore a wide…

软凝聚态物质 · 物理学 2017-05-26 P. Domínguez-García , László Forró , Sylvia Jeney

A new model is proposed to explain coiling of myelins composed of fluid bilayers. This model allows the constituent bilayer cylinders of a myelin to be non-coaxial and the bilayer lateral tension to vary from bilayer to bilayer. The…

软凝聚态物质 · 物理学 2009-11-11 Jung-Ren Huang

We study the buckling of a clamped beam immersed in a creeping flow within a rectangular channel. Via a combination of precision experiments, simulations, and theoretical modeling, we show how the instability depends on a pressure feedback…

软凝聚态物质 · 物理学 2024-07-19 Hemanshul Garg , Pier Giuseppe Ledda , Jon Skov Pedersen , Matteo Pezzulla

The principle of optical trapping is conventionally based on the interaction of optical fields with linear induced polarizations. However, the optical force originating from the nonlinear polarization becomes significant when nonlinear…

光学 · 物理学 2017-09-22 Liping Gong , Bing Gu , Guanghao Rui , Yiping Cui , Zhuqing Zhu , Qiwen Zhan

In bacterial chemotaxis, E. coli cells drift up chemical gradients by a series of runs and tumbles. Runs are periods of directed swimming, and tumbles are abrupt changes in swimming direction. Near the beginning of each run, the rotating…

软凝聚态物质 · 物理学 2009-11-07 Thomas R. Powers

Molecular dynamics has been widely used to numerically solve equation of motion of classical many-particle system. It can be used to simulate many systems including biophysics, whose complexity level is determined by the involved elements.…

生物物理 · 物理学 2014-02-27 Luman Haris , Siti Nurul Khotimah , Freddy Haryanto , Sparisoma Viridi

We use mesoscale numerical simulations to investigate the unsteady dynamics of a single red blood cell (RBC) subjected to an external mechanical load. We carry out a detailed comparison between the {\it loading} (L) dynamics, following the…

软凝聚态物质 · 物理学 2021-06-01 Fabio Guglietta , Marek Behr , Giacomo Falcucci , Mauro Sbragaglia

This study explores the impact of a strong perpendicular laser field on the electronic structure and optical conductivity of bilayer graphene. Employing the Floquet-Bloch theorem and a four-band Hamiltonian model, we calculate the optical…

介观与纳米尺度物理 · 物理学 2024-03-27 S. Sajad Dabiri , Hosein Cheraghchi , Fatemeh Adinehvand , Reza Asgari

Wrinkling of an inextensible elastic lining of an inner-lined tube under imposed pressure is considered. A simple equation modeling the elastic properties of the lining, the pressure, and the soft-substrate forces is derived. This equation…

软凝聚态物质 · 物理学 2022-01-20 Benjamin Foster , Nicolás Verschueren , Edgar Knobloch , Leonardo Gordillo