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The rich and varied ways that genetic material can be passed between species has motivated extensive research into the theory of phylogenetic networks. Features that align with biological processes, or with desirable mathematical…

种群与进化 · 定量生物学 2025-08-12 Andrew Francis

Nature's many varied complex systems (including galaxies, stars, planets, life, and society) are islands of order within the increasingly disordered universe. All organized systems are subject to physical, biological or cultural evolution,…

科普物理 · 物理学 2014-06-12 Eric J. Chaisson

Models of coordinated behavior of populations living in the same environment are introduced for the cases when they either compete with each other, or they both gain by mutual interactions, or finally when one hunts the other one. The…

动力系统 · 数学 2014-03-19 D. Melchionda , E. Pastacaldi , C. Perri , E. Venturino

Extensive cooperation among unrelated individuals is unique to humans, who often sacrifice personal benefits for the common good and work together to achieve what they are unable to execute alone. The evolutionary success of our species is…

物理与社会 · 物理学 2017-07-13 Matjaz Perc , Jillian J. Jordan , David G. Rand , Zhen Wang , Stefano Boccaletti , Attila Szolnoki

Flocking is ubiquitous in nature and emerges due to short- or long-range alignment interactions among self-propelled agents. Two unfriendly species that antialign or even interact nonreciprocally show more complex collective phenomena,…

统计力学 · 物理学 2025-12-17 Jiwon Choi , Jae Dong Noh , Heiko Rieger

Genomic data are rapidly resolving the tree of living species calibrated to time, the timetree of life, which will provide a framework for research in diverse fields of science. Previous analyses of taxonomically restricted timetrees have…

种群与进化 · 定量生物学 2014-12-16 S. Blair Hedges , Julie Marin , Michael Suleski , Madeline Paymer , Sudhir Kumar

We propose a stochastic model for evolution. Births and deaths of species occur with constant probabilities. Each new species is associated with a fitness sampled from the uniform distribution on [0,1]. Every time there is a death event…

概率论 · 数学 2010-11-09 Herve Guiol , Fabio P. Machado , Rinaldo B. Schinazi

Most of the DNA that composes a complex organism is non-coding and defined as junk. Even the coding part is composed of genes that affect the phenotype differently. Therefore, a random mutation has an effect on the specimen fitness that…

种群与进化 · 定量生物学 2021-07-19 Mattia Miotto , Lorenzo Monacelli

We present properties of Lotka-Volterra equations describing ecological competition among a large number of competing species. First we extend to the case of a non-homogeneous niche space stability conditions for solutions representing…

种群与进化 · 定量生物学 2009-07-22 Emilio Hernandez-Garcia , Cristobal Lopez , Simone Pigolotti , Ken H. Andersen

Quantum states evolving at equidistant steps into a set of mutually orthogonal states of finite or infinite cardinality p exhibit an interesting physical effect. The analysis of the amplitudes of the state at half the step time with the…

量子物理 · 物理学 2009-09-29 Hans-Rudolf Thomann

Group formation and coordination are fundamental characteristics of living systems, essential for performing tasks and ensuring survival. Interactions between individuals play a key role in group formation, and the impact of resource…

This paper investigates the competition of two species in a heterogeneous environment subject to the effect of harvesting. The most realistic harvesting case is connected with the intrinsic growth rate, and the harvesting functions are…

The spontaneous organization of collective activities in animal groups and societies has attracted a considerable amount of attention over the last decade. This kind of coordination often permits group-living species to achieve collective…

物理与社会 · 物理学 2010-05-20 Mehdi Moussaid , Simon Garnier , Guy Theraulaz , Dirk Helbing

Theoretically, communities at or near their equilibrium species number resist entry of new species. Such 'biotic resistance' recently has been questioned because of successful entry of alien species into diverse natural communities. Data on…

We study an individual based model describing competition in space between two different alleles. Although the model is similar in spirit to classic models of spatial population genetics such as the stepping stone model, here however space…

We investigate the thermodynamics as well as the population dynamics of ecosystems based on a stochastic approach in which the number of individuals of the several species of the ecosystem are treated as stochastic variables. The several…

统计力学 · 物理学 2024-05-31 Tânia Tomè , Mário J. de Oliveira

The problem of natural selection in dispersal-structured populations consisting of individuals characterized by different diffusion coefficients is studied. The competition between the organisms is taken into account through the assumption…

适应与自组织系统 · 物理学 2020-05-01 E. Heinsalu , D. Navidad Maeso , M. Patriarca

Organisms that exploit different environments may experience a stochastic delay in adjusting their fitness when they switch habitats. We study two species whose fitness is determined by the species composition of the local environment, as…

生物物理 · 物理学 2019-02-04 Marianne Bauer , Erwin Frey

All living things exhibit adaptations that enable them to survive and reproduce in the natural environment that they inhabit. From a biological standpoint, it has long been understood that adaptation comes from natural selection, whereby…

生物物理 · 物理学 2016-06-22 Nikolai Perunov , Robert Marsland , Jeremy England

We investigate the effects of spatial heterogeneity on the coexistence of competing species in the case when the heterogeneity is dynamically generated by environmental flows with chaotic mixing properties. We show that one of the effects…

混沌动力学 · 物理学 2007-05-23 I. Scheuring , G. Karolyi , Z. Toroczkai , T. Tel , A. Pentek