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To minimise systematic errors in Monte Carlo simulations of charged particles, long range electrostatic interactions have to be calculated accurately and efficiently. Standard approaches, such as Ewald summation or the naive application of…

计算物理 · 物理学 2021-02-24 William Robert Saunders , James Grant , Eike Hermann Müller

Techniques for simulating molecules whose conformations satisfy constraints are presented. A method for selecting appropriate moves in Monte Carlo simulations is given. The resulting moves not only obey the constraints but also maintain…

计算物理 · 物理学 2007-05-23 Charles F. F. Karney , Jason E. Ferrara

Artifacts arise in the simulations of electrolytes using periodic boundary conditions (PBC). We show the origin of these artifacts are the periodic image charges and the constraint of charge neutrality inside the simulation box, both of…

软凝聚态物质 · 物理学 2015-09-30 Yihao Liang , Zhenli Xu , Xiangjun Xing

Quantum Mechanics/Molecular Mechanics (QM/MM) simulations are a popular approach to study various features of large systems. A common application of QM/MM calculations is in the investigation of reaction mechanisms in condensed-phase and…

化学物理 · 物理学 2020-10-29 Jorge Nochebuena , Sehr Naseem-Khan , G. Andrés Cisneros

Metropolis Monte Carlo simulation is a powerful tool for studying the equilibrium properties of matter. In complex condensed-phase systems, however, it is difficult to design Monte Carlo moves with high acceptance probabilities that also…

统计力学 · 物理学 2014-05-27 Jerome P. Nilmeier , Gavin E. Crooks , David D. L. Minh , John D. Chodera

Applications that require substantial computational resources today cannot avoid the use of heavily parallel machines. Embracing the opportunities of parallel computing and especially the possibilities provided by a new generation of…

计算物理 · 物理学 2017-09-14 Martin Weigel

Surface tension has a strong influence on the shape of fluid interfaces. We propose a method to calculate the corresponding forces efficiently. In contrast to several previous approaches, we discriminate to this end between surface and…

计算物理 · 物理学 2019-12-05 Fernando Zorrilla , Johannes Sappl , Wolfgang Rauch , Matthias Harders

We have extended the multilevel summation (MLS) method, originally developed to evaluate long-range Coulombic interactions in molecular dynamics (MD) simulations [Skeel et al., J. Comput. Chem., 23, 673 (2002)], to handle dispersion…

材料科学 · 物理学 2014-01-16 Daniel Tameling , Paul Springer , Paolo Bientinesi , Ahmed E. Ismail

The path integral Monte Carlo method is used to simulate dilute trapped Bose gases and to investigate the equilibrium properties at finite temperatures. The quantum particles have a long-range dipole-dipole interaction and a short-range…

统计力学 · 物理学 2009-11-11 Kwangsik Nho , D. P. Landau

We analyze the effects of a long-ranged step-step interaction on thermal roughening within the framework of a solid-on-solid model of a crystal surface by means of Monte Carlo simulation. A repulsive step-step interaction is modeled by…

统计力学 · 物理学 2009-11-07 Frank Gutheim , Heiner Mueller-Krumbhaar , Efim Brener , Vladimir Kaganer

Relativistic plasmas around compact objects can sometimes be approximated as being force-free. In this limit, the plasma inertia is negligible and the overall dynamics is governed by global electric currents. We present a novel numerical…

天体物理仪器与方法 · 物理学 2024-06-14 Yoonsoo Kim , Elias R. Most , William Throwe , Saul A. Teukolsky , Nils Deppe

We propose a method for efficiently coupling the finite element method with atomistic simulations, while using molecular dynamics or kinetic Monte Carlo techniques. Our method can dynamically build an optimized unstructured mesh that…

计算工程、金融与科学 · 计算机科学 2018-05-23 Mihkel Veske , Andreas Kyritsakis , Kristjan Eimre , Vahur Zadin , Alvo Aabloo , Flyura Djurabekova

Long-range quantum systems, in which the interactions decay as $1/r^{\alpha}$, are of increasing interest due to the variety of experimental set-ups in which they naturally appear. Motivated by this, we study fundamental properties of…

量子物理 · 物理学 2026-01-08 Jorge Sánchez-Segovia , Jan T. Schneider , Álvaro M. Alhambra

Damping of structures and systems is often dominated by frictional dissipation in connections, the prediction of which remains a longstanding scientific challenge. Previous studies have shown that the actual topography of contact interfaces…

计算工程、金融与科学 · 计算机科学 2026-03-30 Hendrik D. Linder , David A. Najera-Flores , Robert J. Kuether , Malte Krack

The Vlasov-Poisson system describes the time evolution of a plasma in the so-called collisionless regime. The investigation of a high-temperature plasma that is influenced by an exterior magnetic field is one of the most significant aspects…

最优化与控制 · 数学 2024-07-11 Jan Bartsch , Patrik Knopf , Stefania Scheurer , Jörg Weber

This paper presents a novel particle method to compute strongly coupled incompressible fluid and rigid bodies. The method adopts a velocity-based formulation and utilizes the linear complementarity problem for the incompressibility…

流体动力学 · 物理学 2023-03-01 Shugo Miyamoto , Seiichi Koshizuka

We introduce a Monte-Carlo algorithm for the simulation of charged particles moving in the continuum. Electrostatic interactions are not instantaneous as in conventional approaches, but are mediated by a constrained, diffusing electric…

软凝聚态物质 · 物理学 2009-11-10 Joerg Rottler , A. C. Maggs

Two particle correlations are used to extract information about the characteristic size of the system in proton-proton and heavy ion collisions. The size of the system can be extracted from the Bose-Einstein quantum mechanical effect for…

高能物理 - 实验 · 物理学 2011-01-28 Nicolas Bock

We present a new Monte Carlo method for obtaining solutions of the Boltzmann equation for describing phonon transport in micro and nanoscale devices. The proposed method can resolve arbitrarily small signals (e.g. temperature differences)…

计算物理 · 物理学 2015-05-30 Jean-Philippe Peraud , Nicolas Hadjiconstantinou

Particle-in-cell merging algorithms aim to resample dynamically the six-dimensional phase space occupied by particles without distorting substantially the physical description of the system. Whereas various approaches have been proposed in…

等离子体物理 · 物理学 2015-11-16 Marija Vranic , Thomas Grismayer , Joana L. Martins , Ricardo A. Fonseca , Luis O. Silva