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Lattice spin models are useful for studying critical phenomena and allow the extraction of equilibrium and dynamical properties. Simulations of such systems are usually based on Monte Carlo (MC) techniques, and the main difficulty is often…

计算物理 · 物理学 2012-09-13 Tal Levy , Guy Cohen , Eran Rabani

To date, the simulation of organ deformations for applications like therapy planning or image-guided interventions is calculated by solving the elastodynamics equations. While efficient solvers have been proposed for fast simulations,…

定量方法 · 定量生物学 2018-12-18 Felix Meister , Tiziano Passerini , Viorel Mihalef , Ahmet Tuysuzoglu , Andreas Maier , Tommaso Mansi

Organogenesis is a tightly regulated process that has been studied experimentally for decades. Computational models can help to integrate available knowledge and to better understand the underlying regulatory logic. We are currently…

组织与器官 · 定量生物学 2012-02-03 Philipp Germann , Dzianis Menshykau , Simon Tanaka , Dagmar Iber

During modeling of dynamical systems, often two or more model architectures are combined to obtain a more powerful or efficient model regarding a specific application area. This covers the combination of multiple machine learning…

机器学习 · 计算机科学 2025-02-03 Tobias Thummerer , Lars Mikelsons

Developments of nonlocal operators for modeling processes that traditionally have been described by local differential operators have been increasingly active during the last few years. One example is peridynamics for brittle materials and…

数值分析 · 数学 2020-04-06 Xiaochuan Tian , Bjorn Engquist

All-atom dynamics simulations are an indispensable quantitative tool in physics, chemistry, and materials science, but large systems and long simulation times remain challenging due to the trade-off between computational efficiency and…

材料科学 · 物理学 2024-03-21 Stephen R. Xie , Matthias Rupp , Richard G. Hennig

A family of fast sampling methods is introduced here for molecular simulations of systems having rugged free energy landscapes. The methods represent a generalization of a strategy consisting of adjusting a model for the free energy as a…

计算物理 · 物理学 2022-02-07 Pablo F. Zubieta Rico , Juan J. de Pablo

A fast and accurate computational scheme for simulating nonlinear dynamic systems is presented. The scheme assumes that the system can be represented by a combination of components of only two different types: first-order low-pass filters…

定量方法 · 定量生物学 2008-06-20 J. H. van Hateren

Simulation has become the evaluation method of choice for many areas of distributing computing research. However, most existing simulation packages have several limitations on the size and complexity of the system being modeled. Fine…

分布式、并行与集群计算 · 计算机科学 2011-07-01 Dobre Ciprian , Cristea Valentin , Iosif C. Legrand

Recent applications of machine learning and statistical inference provide case studies demonstrating how such approaches can accelerate the discovery process in physical chemistry and related fields. Examples discussed in this review…

化学物理 · 物理学 2017-06-20 Ryan B. Jadrich , Beth A. Lindquist , Thomas M. Truskett

In this work we analyze strategies for convolutional neural network scaling; that is, the process of scaling a base convolutional network to endow it with greater computational complexity and consequently representational power. Example…

计算机视觉与模式识别 · 计算机科学 2021-03-12 Piotr Dollár , Mannat Singh , Ross Girshick

Scientists investigate the dynamics of complex systems with quantitative models, employing them to synthesize knowledge, to explain observations, and to forecast future system behavior. Complete specification of systems is impossible, so…

定量方法 · 定量生物学 2007-05-23 S. R. Borrett , W. Bridewell , P. Langely , K. R. Arrigo

We present new algorithms and fast implementations to find efficient approximations for modelling stochastic processes. For many numerical computations it is essential to develop finite approximations for stochastic processes. While the…

最优化与控制 · 数学 2020-12-03 Kipngeno Benard Kirui , Georg Ch. Pflug , Alois Pichler

Parallel multiphysics simulations often suffer from load imbalances originating from the applied coupling of algorithms with spatially and temporally varying workloads. It is thus desirable to minimize these imbalances to reduce the time to…

分布式、并行与集群计算 · 计算机科学 2018-12-03 Christoph Rettinger , Ulrich Rüde

Complex phenomena are generally modeled with sophisticated simulators that, depending on their accuracy, can be very demanding in terms of computational resources and simulation time. Their time-consuming nature, together with a typically…

Coupled natural systems are generally modeled at multiple abstraction levels. Both structural scale and behavioral complexity of these models are determinants in the kinds of questions that can be posed and answered. As scale and complexity…

计算工程、金融与科学 · 计算机科学 2018-07-23 Hessam S. Sarjoughian , William A. Boyd , Miguel F. Acevedo

Computational modeling of assembly is challenging for many systems because their timescales vastly exceed those accessible to simulations. This article describes the MultiMSM, which is a general framework that uses Markov state models…

软凝聚态物质 · 物理学 2024-05-07 Anthony Trubiano , Michael F. Hagan

Numerical optimization of complex systems benefits from the technological development of computing platforms in the last twenty years. Unfortunately, this is still not enough, and a large computational time is still necessary when…

最优化与控制 · 数学 2022-09-07 Daniele Peri

A common workflow for many engineering design problems requires the evaluation of the design system to be investigated under a range of conditions. These conditions usually involve a combination of several parameters. To perform a complete…

计算工程、金融与科学 · 计算机科学 2020-09-18 J. H. Gaspar Elsas , N. A. G. Casaprima , I. F. M. Menezes

Mathematical modeling is an essential step, for example, to analyze the transient behavior of a dynamical process and to perform engineering studies such as optimization and control. With the help of first-principles and expert knowledge, a…

机器学习 · 计算机科学 2021-03-30 Pawan Goyal , Peter Benner