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Phylogenetic inference can potentially result in a more accurate tree using data from multiple loci. However, if the loci are incongruent--due to events such as incomplete lineage sorting or horizontal gene transfer--it can be misleading to…

种群与进化 · 定量生物学 2016-03-10 Kevin Gori , Tomasz Suchan , Nadir Alvarez , Nick Goldman , Christophe Dessimoz

Matrices are two-dimensional data structures allowing one to conceptually organize information. For example, adjacency matrices are useful to store the links of a network; correlation matrices are simple ways to arrange gene co-expression…

无序系统与神经网络 · 物理学 2022-09-29 Flaviano Morone

Hierarchical clustering based on pairwise similarities is a common tool used in a broad range of scientific applications. However, in many problems it may be expensive to obtain or compute similarities between the items to be clustered.…

信息论 · 计算机科学 2015-03-19 Brian Eriksson , Gautam Dasarathy , Aarti Singh , Robert Nowak

Clustering is an unsupervised machine learning methodology where unlabeled elements/objects are grouped together aiming to the construction of well-established clusters that their elements are classified according to their similarity. The…

机器学习 · 统计学 2023-10-20 Dimitrios Saligkaras , Vasileios E. Papageorgiou

We present a novel clustering approach for moving object trajectories that are constrained by an underlying road network. The approach builds a similarity graph based on these trajectories then uses modularity-optimization hiearchical graph…

机器学习 · 统计学 2012-10-08 Mohamed Khalil El Mahrsi , Fabrice Rossi

We present a data-driven method to infer the redshift distribution of an arbitrary dataset based on spatial cross-correlation with a reference population and we apply it to various datasets across the electromagnetic spectrum to show its…

宇宙学与河外天体物理 · 物理学 2014-07-31 Brice Ménard , Ryan Scranton , Samuel Schmidt , Chris Morrison , Donghui Jeong , Tamas Budavari , Mubdi Rahman

Standard approaches to tackle high-dimensional supervised classification problem often include variable selection and dimension reduction procedures. The novel methodology proposed in this paper combines clustering of variables and feature…

统计理论 · 数学 2018-11-07 Marie Chavent , Robin Genuer , Jerome Saracco

This study enhances Jiang et al.'s compression-based classification algorithm by addressing its limitations in detecting semantic similarities between text documents. The proposed improvements focus on unigram extraction and optimized…

计算与语言 · 计算机科学 2025-02-21 Sean Lester C. Benavides , Cid Antonio F. Masapol , Jonathan C. Morano , Dan Michael A. Cortez

Most classification methods are based on the assumption that data conforms to a stationary distribution. The machine learning domain currently suffers from a lack of classification techniques that are able to detect the occurrence of a…

The k-means clustering algorithm is a popular algorithm that partitions data into k clusters. There are many improvements to accelerate the standard algorithm. Most current research employs upper and lower bounds on point-to-cluster…

机器学习 · 计算机科学 2024-10-22 Andreas Lang , Erich Schubert

This paper proposes a new distance metric between clusterings that incorporates information about the spatial distribution of points and clusters. Our approach builds on the idea of a Hilbert space-based representation of clusters as a…

机器学习 · 计算机科学 2015-03-18 Parasaran Raman , Jeff M. Phillips , Suresh Venkatasubramanian

Hierarchical and k-medoids clustering are deterministic clustering algorithms based on pairwise distances. Using these same pairwise distances, we propose a novel stochastic clustering method based on random partition distributions. We call…

统计方法学 · 统计学 2021-06-08 David B. Dahl , Jacob Andros , J. Brandon Carter

A novel method to obtain hierarchical and overlapping clusters from network data -i.e., a set of nodes endowed with pairwise dissimilarities- is presented. The introduced method is hierarchical in the sense that it outputs a nested…

社会与信息网络 · 计算机科学 2017-12-13 Fernando Gama , Santiago Segarra , Alejandro Ribeiro

Cluster analysis, or clustering, plays a crucial role across numerous scientific and engineering domains. Despite the wealth of clustering methods proposed over the past decades, each method is typically designed for specific scenarios and…

统计方法学 · 统计学 2026-01-22 Siyi Wang , Alexandre Leblanc , Paul D. McNicholas

Factorial clustering methods have been developed in recent years thanks to the improving of computational power. These methods perform a linear transformation of data and a clustering on transformed data optimizing a common criterion.…

统计理论 · 数学 2012-07-05 Mireille Gettler Summa , Francesco Palumbo , Cristina Tortora

We introduce a density-based clustering method called skeleton clustering that can detect clusters in multivariate and even high-dimensional data with irregular shapes. To bypass the curse of dimensionality, we propose surrogate density…

机器学习 · 统计学 2023-03-09 Zeyu Wei , Yen-Chi Chen

The problem of hierarchical clustering items from pairwise similarities is found across various scientific disciplines, from biology to networking. Often, applications of clustering techniques are limited by the cost of obtaining…

机器学习 · 统计学 2012-07-20 Brian Eriksson

Classification and clustering have been studied separately in machine learning and computer vision. Inspired by the recent success of deep learning models in solving various vision problems (e.g., object recognition, semantic segmentation)…

机器学习 · 计算机科学 2017-12-13 Ali Borji , Aysegul Dundar

Time Series Clustering is an important subroutine in many higher-level data mining analyses, including data editing for classifiers, summarization, and outlier detection. It is well known that for similarity search the superiority of…

机器学习 · 计算机科学 2016-12-05 Nurjahan Begum , Liudmila Ulanova , Hoang Anh Dau , Jun Wang , Eamonn Keogh

Clustering algorithms aim to organize data into groups or clusters based on the inherent patterns and similarities within the data. They play an important role in today's life, such as in marketing and e-commerce, healthcare, data…

机器学习 · 计算机科学 2024-01-17 Hui Yin , Amir Aryani , Stephen Petrie , Aishwarya Nambissan , Aland Astudillo , Shengyuan Cao
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