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In order to associate complex traits with genetic polymorphisms, genome-wide association studies process huge datasets involving tens of thousands of individuals genotyped for millions of polymorphisms. When handling these datasets, which…

基因组学 · 定量生物学 2014-03-26 Elmar Peise , Diego Fabregat-Traver , Paolo Bientinesi

Complex networks are relational data sets commonly represented as graphs. The analysis of their intricate structure is relevant to many areas of science and commerce, and data sets may reach sizes that require distributed storage and…

分布式、并行与集群计算 · 计算机科学 2016-01-05 Jannis Koch , Christian L. Staudt , Maximilian Vogel , Henning Meyerhenke

The data production farm for the CDF experiment is designed and constructed to meet the needs of the Run II data collection at a maximum rate of 20 MByte/sec during the run. The system is composed of a large cluster of personal computers…

Motivated by the observation that FIFO-based push-relabel algorithms are able to outperform highest label-based variants on modern, large maximum flow problem instances, we introduce an efficient implementation of the algorithm that uses…

数据结构与算法 · 计算机科学 2015-07-27 Niklas Baumstark , Guy Blelloch , Julian Shun

Tuning parallel file system in High-Performance Computing (HPC) systems remains challenging due to the complex I/O paths, diverse I/O patterns, and dynamic system conditions. While existing autotuning frameworks have shown promising results…

分布式、并行与集群计算 · 计算机科学 2026-02-27 Md Hasanur Rashid , Nathan R. Tallent , Forrest Sheng Bao , Dong Dai

High Performance Compute (HPC) clusters often produce intermediate files as part of code execution and message passing is not always possible to supply data to these cluster jobs. In these cases, I/O goes back to central distributed storage…

分布式、并行与集群计算 · 计算机科学 2022-12-07 Gabryel Mason-Williams , Dave Bond , Mark Basham

The boom in Large Language Models (LLMs) like GPT-4 and ChatGPT has marked a significant advancement in artificial intelligence. These models are becoming increasingly complex and powerful to train and serve. This growth in capabilities…

分布式、并行与集群计算 · 计算机科学 2023-12-27 Ekansh Agrawal , Xiangyu Sam Xu

We present a new approach to fault tolerance for High Performance Computing system. Our approach is based on a careful adaptation of the Algorithmic Based Fault Tolerance technique (Huang and Abraham, 1984) to the need of parallel…

分布式、并行与集群计算 · 计算机科学 2008-06-20 George Bosilca , Remi Delmas , Jack Dongarra , Julien Langou

Graph processing systems are essential for analyzing large-scale data with complex relationships, yet most existing frameworks rely on statically provisioned clusters, resulting in poor elasticity and inefficient resource utilization under…

分布式、并行与集群计算 · 计算机科学 2026-05-13 Chen Zhao , Parsa Poorsistani , Mohammad Goudarzi , Tawfiq Islam , Adel N. Toosi

Distributed storage systems such as Hadoop File System or Google File System (GFS) ensure data availability and durability using replication. This paper is focused on the analysis of the efficiency of replication mechanism that determines…

分布式、并行与集群计算 · 计算机科学 2017-03-28 Wen Sun , Véronique Simon , Sébastien Monnet , Philippe Robert , Pierre Sens

Genetic Algorithms (GAs) are powerful metaheuristic techniques mostly used in many real-world applications. The sequential execution of GAs requires considerable computational power both in time and resources. Nevertheless, GAs are…

神经与进化计算 · 计算机科学 2013-12-17 Filomena Ferrucci , M-Tahar Kechadi , Pasquale Salza , Federica Sarro

As the landscape of deep neural networks evolves, heterogeneous dataflow accelerators, in the form of multi-core architectures or chiplet-based designs, promise more flexibility and higher inference performance through scalability. So far,…

硬件体系结构 · 计算机科学 2025-10-08 Arne Symons , Linyan Mei , Steven Colleman , Pouya Houshmand , Sebastian Karl , Marian Verhelst

The world's largest particle accelerator, located at CERN, produces petabytes of data that need to be analysed efficiently, to study the fundamental structures of our universe. ROOT is an open-source C++ data analysis framework, developed…

分布式、并行与集群计算 · 计算机科学 2025-01-07 Jolly Chen , Monica Dessole , Ana Lucia Varbanescu

Large-scale, parallel clusters composed of commodity processors are increasingly available, enabling the use of vast processing capabilities and distributed RAM to solve hard search problems. We investigate Hash-Distributed A* (HDA*), a…

人工智能 · 计算机科学 2015-03-20 Akihiro Kishimoto , Alex Fukunaga , Adi Botea

The latest generation of radio astronomy interferometers will conduct all sky surveys with data products consisting of petabytes of spectral line data. Traditional approaches to identifying and parameterising the astrophysical sources…

天体物理仪器与方法 · 物理学 2014-07-21 Stefan Westerlund , Christopher Harris

Fault tolerance overhead of high performance computing (HPC) applications is becoming critical to the efficient utilization of HPC systems at large scale. HPC applications typically tolerate fail-stop failures by checkpointing. Another…

分布式、并行与集群计算 · 计算机科学 2011-06-22 Erlin Yao , Mingyu Chen , Rui Wang , Wenli Zhang , Guangming Tan

The challenges expected for the next era of the Large Hadron Collider (LHC), both in terms of storage and computing resources, provide LHC experiments with a strong motivation for evaluating ways of rethinking their computing models at many…

Federated Learning (FL) is a decentralized machine learning paradigm where models are trained on distributed devices and are aggregated at a central server. Existing FL frameworks assume simple two-tier network topologies where end devices…

The Graph Convolutional Network (GCN) model and its variants are powerful graph embedding tools for facilitating classification and clustering on graphs. However, a major challenge is to reduce the complexity of layered GCNs and make them…

机器学习 · 计算机科学 2020-08-06 Hanqing Zeng , Hongkuan Zhou , Ajitesh Srivastava , Rajgopal Kannan , Viktor Prasanna

The data science community today has embraced the concept of Dataframes as the de facto standard for data representation and manipulation. Ease of use, massive operator coverage, and popularization of R and Python languages have heavily…