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In a \emph{weighted sequence}, for every position of the sequence and every letter of the alphabet a probability of occurrence of this letter at this position is specified. Weighted sequences are commonly used to represent imprecise or…

数据结构与算法 · 计算机科学 2017-08-28 Carl Barton , Tomasz Kociumaka , Chang Liu , Solon P. Pissis , Jakub Radoszewski

A factorization $f_1, \ldots, f_m$ of a string $w$ of length $n$ is called a repetition factorization of $w$ if $f_i$ is a repetition, i.e., $f_i$ is a form of $x^kx'$, where $x$ is a non-empty string, $x'$ is a (possibly-empty) proper…

数据结构与算法 · 计算机科学 2024-08-09 Yuki Yonemoto , Shunsuke Inenaga

Given a string $T$ of length $n$, a substring $u = T[i..j]$ of $T$ is called a shortest unique substring (SUS) for an interval $[s,t]$ if (a) $u$ occurs exactly once in $T$, (b) $u$ contains the interval $[s,t]$ (i.e. $i \leq s \leq t \leq…

数据结构与算法 · 计算机科学 2020-09-15 Takuya Mieno , Dominik Köppl , Yuto Nakashima , Shunsuke Inenaga , Hideo Bannai , Masayuki Takeda

In this paper, we consider the problem of approximating the densest subgraph in the dynamic graph stream model. In this model of computation, the input graph is defined by an arbitrary sequence of edge insertions and deletions and the goal…

数据结构与算法 · 计算机科学 2015-06-16 Andrew McGregor , David Tench , Sofya Vorotnikova , Hoa T. Vu

Change point detection plays a fundamental role in many real-world applications, where the goal is to analyze and monitor the behaviour of a data stream. In this paper, we study change detection in binary streams. To this end, we use a…

机器学习 · 计算机科学 2023-01-24 Nikolaj Tatti

DNA sequencing is the process of determining the exact order of the nucleotide bases of an individual's genome in order to catalogue sequence variation and understand its biological implications. Whole-genome sequencing techniques produce…

数据结构与算法 · 计算机科学 2015-09-18 Ljiljana Brankovic , Costas S. Iliopoulos , Ritu Kundu , Manal Mohamed , Solon P. Pissis , Fatima Vayani

We study the problem of partitioning integer sequences in the one-pass data streaming model. Given is an input stream of integers $X \in \{0, 1, \dots, m \}^n$ of length $n$ with maximum element $m$, and a parameter $p$. The goal is to…

数据结构与算法 · 计算机科学 2014-07-08 Christian Konrad , László Kozma

The distinct elements problem is one of the fundamental problems in streaming algorithms --- given a stream of integers in the range $\{1,\ldots,n\}$, we wish to provide a $(1+\varepsilon)$ approximation to the number of distinct elements…

数据结构与算法 · 计算机科学 2019-01-07 Jarosław Błasiok

Given two strings $S$ and $P$, the Episode Matching problem is to find the shortest substring of $S$ that contains $P$ as a subsequence. The best known upper bound for this problem is $\tilde O(nm)$ by Das et al. (1997) , where $n,m$ are…

数据结构与算法 · 计算机科学 2024-02-15 Philip Bille , Inge Li Gørtz , Shay Mozes , Teresa Anna Steiner , Oren Weimann

In this paper, we present an improved algorithm for the maximum flow problem on general networks with $n$ vertices and $m$ arcs. We show how to solve the problem in $O(mn)$ time, when $m = O(n^{2-\epsilon})$, for some $0 <\epsilon \leq 1$.…

数据结构与算法 · 计算机科学 2013-10-30 Rahul Mehta

Finding models for linear-time properties is a central problem in verification and planning. We study the distribution of linear-time models by investigating the density of linear-time properties over the space of ultimately periodic words.…

形式语言与自动机理论 · 计算机科学 2018-03-26 Bernd Finkbeiner , Hazem Torfah

One of the most fundamental method for comparing two given strings $A$ and $B$ is the longest common subsequence (LCS), where the task is to find (the length) of an LCS of $A$ and $B$. In this paper, we deal with the STR-IC-LCS problem…

数据结构与算法 · 计算机科学 2024-05-21 Yuki Yonemoto , Yuto Nakashima , Shunsuke Inenaga , Hideo Bannai

In this paper, we consider a generalized longest common subsequence problem with multiple substring exclusion constrains. For the two input sequences $X$ and $Y$ of lengths $n$ and $m$, and a set of $d$ constrains $P=\{P_1,...,P_d\}$ of…

数据结构与算法 · 计算机科学 2013-03-11 Lei Wang , Xiaodong Wang , Yingjie Wu , Daxin Zhu

The use of realistic input models has gained popularity in the theory community. Assuming a realistic input model often precludes complicated hypothetical inputs, and the analysis yields bounds that better reflect the behaviour of…

计算几何 · 计算机科学 2022-11-15 Joachim Gudmundsson , Zijin Huang , Sampson Wong

We investigate pseudo-polynomial time algorithms for Subset Sum. Given a multi-set $X$ of $n$ positive integers and a target $t$, Subset Sum asks whether some subset of $X$ sums to $t$. Bringmann proposes an $\tilde{O}(n + t)$-time…

数据结构与算法 · 计算机科学 2026-04-29 Lin Chen , Jiayi Lian , Yuchen Mao , Guochuan Zhang

Given a string $S$ over an alphabet $\Sigma$, the 'string indexing problem' is to preprocess $S$ to subsequently support efficient pattern matching queries, i.e., given a pattern string $P$ report all the occurrences of $P$ in $S$. In this…

数据结构与算法 · 计算机科学 2023-01-24 Philip Bille , Johannes Fischer , Inge Li Gørtz , Max Rishøj Pedersen , Tord Joakim Stordalen

While in many graph mining applications it is crucial to handle a stream of updates efficiently in terms of {\em both} time and space, not much was known about achieving such type of algorithm. In this paper we study this issue for a…

数据结构与算法 · 计算机科学 2015-09-23 Sayan Bhattacharya , Monika Henzinger , Danupon Nanongkai , Charalampos E. Tsourakakis

We give the first optimal bounds for returning the $\ell_1$-heavy hitters in a data stream of insertions, together with their approximate frequencies, closing a long line of work on this problem. For a stream of $m$ items in $\{1, 2, \dots,…

数据结构与算法 · 计算机科学 2016-03-02 Arnab Bhattacharyya , Palash Dey , David P. Woodruff

Given a length $n$ sample from $\mathbb{R}^d$ and a neural network with a fixed architecture with $W$ weights, $k$ neurons, linear threshold activation functions, and binary outputs on each neuron, we study the problem of uniformly sampling…

机器学习 · 计算机科学 2019-12-12 Changlong Wu , Narayana Prasad Santhanam

New algorithms are devised for finding the maxima of multidimensional point samples, one of the very first problems studied in computational geometry. The algorithms are very simple and easily coded and modified for practical needs. The…

数据结构与算法 · 计算机科学 2009-10-09 Wei-Mei Chen , Hsien-Kuei Hwang , Tsung-Hsi Tsai