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We develop a novel biased Monte-Carlo simulation technique to measure the force-extension curves and the distribution function of the extension of fluctuating filaments stretched by external force. The method is applicable for arbitrary…

软凝聚态物质 · 物理学 2007-05-23 David A. Kessler , Yitzhak Rabin

We develop a scaling theory to describe dynamic fluctuations of a semiflexible polymer and find several distinct regimes. We performed simulations to characterize the longitudinal and transverse dynamics; using ensemble averaging for a…

软凝聚态物质 · 物理学 2009-10-31 R. Everaers , F. Julicher , A. Ajdari , A. C. Maggs

In lattice models local pressure on a surface is derived from the change in the free energy of the system due to the exclusion of a certain boundary site, while the total force on the surface can be obtained by a similar exclusion of all…

统计力学 · 物理学 2014-12-01 Yosi Hammer , Yacov Kantor

We present a statistical mechanical study of stiff polymers, motivated by experiments on actin filaments and the considerable current interest in polymer networks. We obtain simple, approximate analytical forms for the force-extension…

软凝聚态物质 · 物理学 2009-11-13 Abhijit Ghosh , Joseph Samuel , Supurna Sinha

We consider a wide class of linear stochastic problems driven off the equilibrium by a multiplicative asymmetric force. The force brakes detailed balance, maintained otherwise, thus producing entropy. The large deviation function of the…

混沌动力学 · 物理学 2009-11-11 K. Turitsyn , M. Chertkov , V. Y. Chernyak , A. Puliafito

The non-equilibrium structural and dynamical properties of semiflexible polymers confined to two dimensions are investigated by molecular dynamics simulations. Three different scenarios are considered: The force-extension relation of…

软凝聚态物质 · 物理学 2013-01-08 A. Lamura , R. G. Winkler

We consider a single living semi-flexible filament with persistence length l_p in chemical equilibrium with a solution of free monomers at fixed monomer chemical potential mu_1 and fixed temperature T. While one end of the filament is…

生物物理 · 物理学 2015-10-28 Carlo Pierleoni , Giovanni Ciccotti , Jean-Paul Ryckaert

We study the response of granular materials to external stress using experiment, simulation, and theory. We derive an entropic, Ginzburg-Landau functional that enforces mechanical stability and positivity of contact forces. In this…

The non-equilibrium structural and dynamical properties of a flexible polymer tethered to a reflecting wall and subject to oscillatory linear flow are studied by numerical simulations. Polymer is confined in two dimensions and is modeled as…

软凝聚态物质 · 物理学 2024-07-30 A. Lamura

We consider directed semiflexible polymers embedded in a fluctuating surface which is governed by either surface tension or bending rigidity. The attractive interactions induced by the fluctuations of the surface reduce the rigidity of the…

凝聚态物理 · 物理学 2009-10-28 Ramin Golestanian

Many biological systems are appropriately viewed as passive inclusions immersed in an active bath: from proteins on active membranes to microscopic swimmers confined by boundaries. The non-equilibrium forces exerted by the active bath on…

软凝聚态物质 · 物理学 2020-07-06 Alpha A. Lee , Dominic Vella , John S. Wettlaufer

Recent developments of microscopic mechanical experiments allow the manipulation of individual polymer molecules in two main ways: \textit{uniform} stretching by external forces and \textit{non-uniform} stretching by external fields. Many…

生物物理 · 物理学 2015-06-11 Fabio Manca , Stefano Giordano , Pier Luca Palla , Fabrizio Cleri , Luciano Colombo

Particles embedded in a fluctuating interface experience forces and torques mediated by the deformations and by the thermal fluctuations of the medium. Considering a system of two cylinders bound to a fluid membrane we show that the…

软凝聚态物质 · 物理学 2011-05-31 Pierre Gosselin , Hervé Mohrbach , Martin Michael Müller

Using canonical Monte Carlo simulations, we introduce a new numerical procedure for comparing the entropic exponents of polymers with different constraints and/or topologies. Setting up competitions between polymer segments which can…

软凝聚态物质 · 物理学 2007-11-28 Roya Zandi , Yacov Kantor , Mehran Kardar

Confined motions in complex environments are ubiquitous in microbiology. These situations invariably involve the intricate coupling between fluid flow, soft boundaries, surface forces and fluctuations. In the present study, such a coupling…

软凝聚态物质 · 物理学 2024-05-24 Nicolas Fares , Maxime Lavaud , Zaicheng Zhang , Aditya Jha , Yacine Amarouchene , Thomas Salez

Tissue-scale shape changes are driven by ensembles of intracellular forces. However measuring force in these contexts remains a difficult challenge. Here we perform spectral analysis of transverse fluctuations of cell-cell junctions in…

软凝聚态物质 · 物理学 2026-05-13 Brian Huynh , Shinuo Weng , José Alvarado

The fluctuation pressure that an infinitely extended fluid membrane exerts on two enclosing parallel hard walls is computed. Variational perturbation theory is used to extract the hard-wall limit from a perturbative expansion through six…

统计力学 · 物理学 2007-05-23 Boris Kastening

We study the mechanical properties of semiflexible polymers when the contour length of the polymer is comparable to its persistence length. We compute the exact average end-to-end distance and shape of the polymer for different boundary…

生物大分子 · 定量生物学 2013-05-29 Yuko Hori , Ashok Prasad , Jane' Kondev

In this article we address the problem of Euler's buckling instability in a charged semi-flexible polymer that is under the action of a compressive force. We consider this instability as a phase transition and investigate the role of…

软凝聚态物质 · 物理学 2015-05-27 Khabat Ghamari , Ali Najafi

The sliding friction force exerted by stochastic linkers interacting with a moving filament is calculated. The elastic properties of the substrate on which the linkers are anchored are shown to strongly influence the friction force. In some…

软凝聚态物质 · 物理学 2015-06-17 Pierre Sens