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Understanding transition pathways between two meta-stable states of a molecular system is crucial to advance drug discovery and material design. However, unbiased molecular dynamics (MD) simulations are computationally infeasible because of…

机器学习 · 计算机科学 2025-01-28 Kiyoung Seong , Seonghyun Park , Seonghwan Kim , Woo Youn Kim , Sungsoo Ahn

Molecular dynamics simulations are used to study structure formation in simple model polymer chains that are subject to excluded volume and torsional interactions. The changing conformations exhibited by chains of different lengths under…

软凝聚态物质 · 物理学 2009-11-07 D. C. Rapaport

Entangled polymers are deformed by a strong shear flow. The shape of the polymer, called the form factor, is measured by small angle neutron scattering. However, the real-space molecular structure is not directly available from the…

Phase field methods have been widely used to study phase transitions and polarization switching in ferroelectric thin films. In this paper, we develop an efficient numerical scheme for the variational phase field model based on variational…

计算物理 · 物理学 2020-12-22 Ruotai Li , Qiang Du , Lei Zhang

We have studied the transition in shape of two dimensional polyampholytes using Monte Carlo simulation. We observe that polymers with randomly charged monomers get into a globular shape at lower temperatures, provided that their total…

凝聚态物理 · 物理学 2007-05-23 M. R. Ejtehadi , S. Rouhani

The implicit theory that a simulation represents is precisely not in the individual choices but rather in the 'envelope' of possible trajectories - what is important is the shape of the whole envelope. Typically a huge amount of computation…

编程语言 · 计算机科学 2007-05-23 Oswaldo Teran , Bruce Edmonds , Steve Wallis

In this paper we study the shape characteristics of star-like polymers in various solvent quality using a mesoscopic level of modeling. The dissipative particle dynamics simulations are performed for the homogeneous and four different…

软凝聚态物质 · 物理学 2020-03-24 O. Kalyuzhnyi , J. M. Ilnytskyi , Yu. Holovatch , C. von Ferber

We present a derivation of the stress field for an interacting quantum system within the framework of local density functional theory. The formulation is geometric in nature and exploits the relationship between the strain tensor field and…

材料科学 · 物理学 2007-05-23 Christopher L. Rogers , Andrew M. Rappe

We investigate the phenomenon of protein induced tubulation of lipid bilayer membranes within a continuum framework using Monte Carlo simulations coupled with the Widom insertion technique to compute excess chemical potentials. Tubular…

生物物理 · 物理学 2015-10-13 Richard W. Tourdot , N. Ramakrishnan , Tobias Baumgart , Ravi Radhakrishnan

Understanding the transport mechanism of electronic excitations in conjugated polymers is key to advancing organic optoelectronic applications, such as solar cells, OLEDs and flexible electronics. While crystalline polymers can be studied…

材料科学 · 物理学 2021-12-13 Francesco Campaioli , Jared H. Cole

We present molecular dynamics simulations on the structural relaxation of a simple bead-spring model for polymer blends. The introduction of a different monomer size induces a large time scale separation for the dynamics of the two…

软凝聚态物质 · 物理学 2009-11-13 A. J. Moreno , J. Colmenero

We report a novel multi-scale simulation methodology to quantitatively predict the thermodynamic behaviour of polymer mixtures, that exhibit phases with broken orientational symmetry. Our system consists of a binary mixture of oligomers and…

软凝聚态物质 · 物理学 2021-12-07 William S. Fall , Hima Bindu Kolli , Biswaroop Mukherjee , Buddhapriya Chakrabarti

This work concerns a structural topology optimisation problem for 4D printing based on the phase field approach. The concept of 4D printing as a targeted evolution of 3D printed structures can be realised in a two-step process. One first…

最优化与控制 · 数学 2023-05-03 Harald Garcke , Kei Fong Lam , Robert Nürnberg , Andrea Signori

Stress transmission inside three dimensional granular packings is investigated using computer simulations. Localized force perturbation techniques are implemented for frictionless and frictional shallow, ordered, granular arrays confined by…

软凝聚态物质 · 物理学 2015-05-30 Abdullah Cakir , Leonardo E. Silbert

We demonstrate how an iterative method for potential inversion from distribution functions developed for simple liquid systems can be generalized to polymer systems. It uses the differences in the potentials of mean force between the…

软凝聚态物质 · 物理学 2007-05-23 Dirk Reith , Mathias Puetz , Florian Mueller-Plathe

In the course of animal development, the shape of tissue emerges in part from mechanical and biochemical interactions between cells. Measuring stress in tissue is essential for studying morphogenesis and its physical constraints.…

定量方法 · 定量生物学 2013-01-21 S. Ishihara , K. Sugimura , S. J. Cox , I. Bonnet , Y. Bellaiche , F. Graner

Herein an alternative model to reptation to describe concentrated polymer dynamics is developed. The model assumes that the chains act as blobs that are able to diffuse past each other in a compressed state. Allowing that the local…

软凝聚态物质 · 物理学 2022-02-25 Dave E. Dunstan

We study the stress-energy tensor of a massless, conformally coupled, quantum scalar field in a rigidly-rotating thermal state on three- and four-dimensional anti-de Sitter space-time. We first find the stress-energy tensor using…

高能物理 - 理论 · 物理学 2025-08-08 Jacob C. Thompson , Elizabeth Winstanley

We propose a numerical method for kinetic plasma simulation in which the phase-space distribution function is represented by a low-rank tensor network with an adaptive level of compression. The Vlasov-Poisson system is advanced using Strang…

计算物理 · 物理学 2026-02-16 Erik M. Åsgrim , Luca Pennati , Marco Pasquale , Stefano Markidis

We consider the response of a multicomponent body to $n$ fields, such as electric fields, magnetic fields, temperature gradients, concentration gradients, etc., where each component, which is possibly anisotropic, may cross couple the…

材料科学 · 物理学 2016-02-23 Mordehai Milgrom , Graeme W. Milton