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Motivated by the formation of ring-like filament structures in the cortex of plant and animal cells, we study the dynamics of a two-dimensional layer of cytoskeletal filaments and motor proteins near a surface by a general continuum theory.…

We investigate with numerical simulations the influence of topology and stiffness on macroscopic rheological properties of polymer melts consisting of unknotted, knotted or concatenated rings. While melts of flexible, knotted oligomer rings…

软凝聚态物质 · 物理学 2024-10-18 Ranajay Datta , Peter Virnau

Biological filaments such as DNA or bacterial flagella are typically curved in their natural states. To elucidate the interplay of viscous drag, twisting, and bending in the overdamped dynamics of such filaments, we compute the steady-state…

软凝聚态物质 · 物理学 2009-10-31 Stephan A. Koehler , Thomas R. Powers

Helically coiled filaments are a frequent motif in nature. In situations commonly encountered in experiments coiled helices are squeezed flat onto two dimensional surfaces. Under such 2-D confinement helices form "squeelices" - peculiar…

软凝聚态物质 · 物理学 2015-06-05 Gi-Moon Nam , Nam-Kyung Lee , Hervé Mohrbach , Albert Johner , Igor M. Kulić

Semiflexible polymers form central structures in biological material. Modeling approaches usually neglect influences of polymer-specific molecular features aiming to describe semiflexible polymers universally. Here, we investigate the…

The morphological nature of structures that form under gravitational instability has been of central interest to cosmology for over two decades. A remarkable feature of large scale structures in the Universe is that they occupy a relatively…

天体物理学 · 物理学 2009-10-28 B. S. Sathyaprakash , V. Sahni , S. F. Shandarin

Bundles of stiff filaments are ubiquitous in the living world, found both in the cytoskeleton and in the extracellular medium. These bundles are typically held together by smaller cross-linking molecules. We demonstrate analytically,…

The low-energy physics of (quasi)degenerate one-dimensional systems is typically understood as the particle-like dynamics of kinks between stable, ordered structures. Such dynamics, we show, becomes highly non-trivial when the ground states…

软凝聚态物质 · 物理学 2014-11-27 Cristiano Nisoli , Alexander V. Balatsky

The assembly of filamentous bundles with controlled diameters is common in biological systems and desirable for the development of nanomaterials. We discuss dynamical simulations and free energy calculations on patchy spheres with chiral…

软凝聚态物质 · 物理学 2015-05-18 Yasheng Yang , Robert B. Meyer , Michael F. Hagan

We present a novel mechanism for resolving the mechanical rigidity of nanoscopic circular polymers that flow in a complex environment. The emergence of a regime of negative differential mobility induced by topological interactions between…

软凝聚态物质 · 物理学 2018-11-21 Stefano Iubini , Enzo Orlandini , Davide Michieletto , Marco Baiesi

Twisted and rope-like assemblies of filamentous molecules are common and vital structural elements in cells and tissue of living organisms. We study the intrinsic frustration occurring in these materials between the two-dimensional…

软凝聚态物质 · 物理学 2015-06-03 Amir Azadi , Gregory M. Grason

The relaxation of twist in elastic filaments often drives conformational changes. We explore this paradigm using all-atom computations and report the formation of novel supercoiled shapes in individual carbon nanotubes (CNTs). Decreasing…

介观与纳米尺度物理 · 物理学 2014-10-28 Alireza Shahabi , Moneesh Upmanyu

Nature uses elongated shapes and filaments to build stable structures, generate motion, and allow complex geometric interactions. In this Review, we examine the role of biological filaments across different length scales. From the molecular…

软凝聚态物质 · 物理学 2025-07-25 Jan Cammann , Hannah Laeverenz-Schlogelhofer , Kirsty Y. Wan , Marco G. Mazza

The interstellar medium is characterised by an intricate filamentary network which exhibits complex structures. These show a variety of different shapes (e.g. junctions, rings, etc.) deviating strongly from the usually assumed cylindrical…

星系天体物理 · 物理学 2021-07-14 Elena Hoemann , Stefan Heigl , Andreas Burkert

Inspired by the complex influence of the globular crosslinking proteins on the formation of biofilament bundles in living organisms, we study and analyze a theoretical model for the structure and thermodynamics of bundles of helical…

软凝聚态物质 · 物理学 2012-01-19 Claus Heussinger , Gregory M. Grason

A collection of thin structures buckle, bend, and bump into each-other when confined. This contact can lead to the formation of patterns: hair will self-organize in curls; DNA strands will layer into cell nuclei; paper, when crumpled, will…

软凝聚态物质 · 物理学 2023-04-19 Arman Guerra , Anja Slim , Douglas P. Holmes , Ousmane Kodio

In this work we investigate structural properties of native states of a simple model for short flexible homopolymers, where the steric influence of monomeric side chains is effectively introduced by a thickness constraint. This geometric…

软凝聚态物质 · 物理学 2010-02-11 Thomas Vogel , Thomas Neuhaus , Michael Bachmann , Wolfhard Janke

Polymer composites are ubiquitous in biology and industry alike, owing to their emergent desirable mechanical properties not attainable in single-species systems. At the same time, polymer topology has been shown to play a key role in…

Many biological tissues feature a heterogeneous network of fibers whose tensile and bending rigidity contribute substantially to these tissues' elastic properties. Rigidity percolation has emerged as a important paradigm for relating these…

The necking instability is a precursor to tensile failure and rupture of materials. A quasistatically loaded free-standing uniaxial specimen typically exhibits necking at a single location, corresponding to a long wavelength bifurcation…

软凝聚态物质 · 物理学 2023-01-04 Jian Li , Hannah Varner , Tal Cohen
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