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With the proliferation of research means and computational methodologies, published biomedical literature is growing exponentially in numbers and volume. Cancer cell lines are frequently used models in biological and medical research that…

计算与语言 · 计算机科学 2024-02-13 Ellery Smith , Rahel Paloots , Dimitris Giagkos , Michael Baudis , Kurt Stockinger

Two decades ago, a breakthrough in indexing string collections made it possible to represent them within their compressed space while at the same time offering indexed search functionalities. As this new technology permeated through…

数据结构与算法 · 计算机科学 2022-11-28 Gonzalo Navarro

Recent neural network approaches to summarization are largely either selection-based extraction or generation-based abstraction. In this work, we present a neural model for single-document summarization based on joint extraction and…

计算与语言 · 计算机科学 2019-09-11 Jiacheng Xu , Greg Durrett

The ability to find short representations, i.e. to compress data, is crucial for many intelligent systems. We present a theory of incremental compression showing that arbitrary data strings, that can be described by a set of features, can…

信息论 · 计算机科学 2020-09-15 Arthur Franz , Oleksandr Antonenko , Roman Soletskyi

We introduce a novel method to analyse complete genomes and recognise some distinctive features by means of an adaptive compression algorithm, which is not DNA-oriented. We study the Information Content as a function of the number of…

基因组学 · 定量生物学 2007-05-23 Giulia Menconi

We present data augmentation techniques for process extraction tasks in scientific publications. We cast the process extraction task as a sequence labeling task where we identify all the entities in a sentence and label them according to…

计算与语言 · 计算机科学 2025-04-16 Yuni Susanti

This report argues that, even in the simplest cases, IE is an ontology-driven process. It is not a mere text filtering method based on simple pattern matching and keywords, because the extracted pieces of texts are interpreted with respect…

人工智能 · 计算机科学 2016-08-16 Claire Nédellec , Adeline Nazarenko

In this paper, we compare various methods to compress a text using a neural model. We find that extracting tokens as latent variables significantly outperforms the state-of-the-art discrete latent variable models such as VQ-VAE.…

计算与语言 · 计算机科学 2019-01-28 Aran Komatsuzaki

Terminology extraction, also known as term extraction, is a subtask of information extraction. The goal of terminology extraction is to extract relevant words or phrases from a given corpus automatically. This paper focuses on the…

计算与语言 · 计算机科学 2021-01-25 Suman Dowlagar , Radhika Mamidi

Dynamic Bayesian networks (DBNs) offer an elegant way to integrate various aspects of language in one model. Many existing algorithms developed for learning and inference in DBNs are applicable to probabilistic language modeling. To…

计算与语言 · 计算机科学 2007-05-23 Leonid Peshkin , Avi Pfeffer

The extraction of variable definitions from scientific and technical papers is essential for understanding these documents. However, the characteristics of variable definitions, such as the length and the words that make up the definition,…

计算与语言 · 计算机科学 2024-12-06 Kotaro Nagayama , Shota Kato , Manabu Kano

Citation parsing is fundamental for search engines within academia and the protection of intellectual property. Meticulous extraction is further needed when evaluating the similarity of documents and calculating their citation impact.…

数字图书馆 · 计算机科学 2018-05-23 Niall Martin Ryan

We develop an abstractive summarization framework independent of labeled data for multiple heterogeneous documents. Unlike existing multi-document summarization methods, our framework processes documents telling different stories instead of…

计算与语言 · 计算机科学 2022-05-03 Ning Wang , Han Liu , Diego Klabjan

First we consider pair-wise distances for literal objects consisting of finite binary files. These files are taken to contain all of their meaning, like genomes or books. The distances are based on compression of the objects concerned,…

信息论 · 计算机科学 2011-10-21 Paul M. B. Vitanyi

This paper proposes an efficient example sampling method for example-based word sense disambiguation systems. To construct a database of practical size, a considerable overhead for manual sense disambiguation (overhead for supervision) is…

计算与语言 · 计算机科学 2007-05-23 Atsushi Fujii , Kentaro Inui , Takenobu Tokunaga , Hozumi Tanaka

Keyphrase extraction is the task of finding several interesting phrases in a text document, which provide a list of the main topics within the document. Most existing graph-based models use co-occurrence links as cohesion indicators to…

计算与语言 · 计算机科学 2021-11-16 Yuchen Liang , Mohammed J. Zaki

In an effort to better understand meaning from natural language texts, we explore methods aimed at organizing lexical objects into contexts. A number of these methods for organization fall into a family defined by word ordering. Unlike…

This paper presents an unsupervised extractive approach to summarize scientific long documents based on the Information Bottleneck principle. Inspired by previous work which uses the Information Bottleneck principle for sentence…

计算与语言 · 计算机科学 2021-10-05 Jiaxin Ju , Ming Liu , Huan Yee Koh , Yuan Jin , Lan Du , Shirui Pan

Definition Extraction (DE) is one of the well-known topics in Information Extraction that aims to identify terms and their corresponding definitions in unstructured texts. This task can be formalized either as a sentence classification task…

计算与语言 · 计算机科学 2020-05-01 Amir Pouran Ben Veyseh , Franck Dernoncourt , Dejing Dou , Thien Huu Nguyen

Many computational linguistic methods have been proposed to study the information content of languages. We consider two interesting research questions: 1) how is information distributed over long documents, and 2) how does content…

计算与语言 · 计算机科学 2023-09-13 Shaoxiong Ji , Wei Sun , Pekka Marttinen