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We generalize the standard Penna bit-string model of biological ageing by assuming that each deleterious mutation diminishes the survival probability in every time interval by a small percentage. This effect is added to the usual lethal but…

统计力学 · 物理学 2015-06-24 J. S. Sá Martins , D. Stauffer

The standard Penna ageing model with sexual reproduction is enlarged by adding additional bit-strings for love: Marriage happens only if the male love strings are sufficiently different from the female ones. We simulate at what level of…

种群与进化 · 定量生物学 2015-05-19 D. Stauffer , S. Cebrat , T. J. P. Penna , A. O. Sousa

The sexual version of the Penna model of biological ageing, simulated since 1996, is compared here with alternative forms of reproduction as well as with models not involving ageing. In particular we want to check how sexual forms of life…

Modifying the Redfield model of sexual reproduction and the Penna model of biological aging, we compare reproduction with and without recombination in age-structured populations. In contrast to Redfield and in agreement with Bernardes we…

The Penna model is a strategy to simulate the genetic dynamics of age-structured populations, in which the individuals genomes are represented by bit-strings. It provides a simple metaphor for the evolutionary process in terms of the…

种群与进化 · 定量生物学 2009-11-11 Veit Schwämmle , Suzana M. de Oliveira

The bit-string Penna Model is used to simulate the competition between an asexual parthenogenetic and a sexual population sharing the same environment. A new-born of either population can mutate and become a part of the other with some…

统计力学 · 物理学 2009-10-31 J. S. Sa' Martins

The population in the sexual Penna ageing model is first separated into several reproductively isolated groups. Then, after equilibration, sexual mixing between the groups is allowed. We study the changes in the population size due to this…

种群与进化 · 定量生物学 2009-11-13 K. Bonkowska , M. Kula , S. Cebrat , D. Stauffer

We have modified the sexual Penna model by introducing the fluctuating environment and fluctuations representing physiological functions of individuals. Additionally, we have introduced the mother care corresponding to the protection…

种群与进化 · 定量生物学 2008-11-04 Przemyslaw Biecek , Katarzyna Bonkowska , Stanislaw Cebrat

We modify the Penna Model for biological aging, which is based on the mutation-accumulation theory, in order to verify if there would be any evolutionary advantage of triploid over diploid organisms. We show that this is not the case, and…

统计力学 · 物理学 2007-05-23 A. O. Sousa , S. Moss de Oliveira , J. S. Sa Martins

We describe the simulation method of modelling the population evolution using Monte Carlo based on the Penna model. Individuals in the populations are represented by their diploid genomes. Genes expressed after the minimum reproduction age…

基因组学 · 定量生物学 2009-01-13 Agnieszka Laszkiewicz , Przemyslaw Biecek , Katarzyna Bonkowska , Stanislaw Cebrat

We introduce fidelity into the bit-string Penna model for biological ageing and study the advantage of this fidelity when it produces a higher survival probability of the offspring due to paternal care. We attribute a lower reproduction…

统计力学 · 物理学 2009-10-31 A. O. Sousa , S. Moss de Oliveira

No abstract given. Confirms earlier simulatiobns of the self-organization of dominance in the sexual Penna model, and the advantage of hermaphroditic over sexual reproduction.

种群与进化 · 定量生物学 2007-05-23 Klaus Blindert

We have analysed the possibility of scaling the sexual Penna ageing model. Assuming that the number of genes expressed before the reproduction age grows linearly with the genome size and that the mutation rate per genome and generation is…

种群与进化 · 定量生物学 2007-05-23 A. Laszkiewicz , S. Cebrat , D. Stauffer

The understanding of language competition helps us to predict extinction and survival of languages spoken by minorities. A simple agent-based model of a sexual population, based on the Penna model, is built in order to find out under which…

物理与社会 · 物理学 2009-11-11 Veit Schwammle

An asexual set of primitive bacteria is simulated with a bit-string Penna model with a Fermi function for survival. A recent hypothesis by Jan, Stauffer and Moseley on the evolution of sex from asexual cells as a strategy for trying to…

软凝聚态物质 · 物理学 2009-10-31 Bora Orcal , Erkan Tuzel , Volkan Sevim , Naeem Jan , Ayse Erzan

The possible coexistence of one host, one aggressive parasite and one non-lethal parasite is simulated using the Penna model of biological ageing. If the aggressive parasites survive the difficult initial times where they have to adjust…

种群与进化 · 定量生物学 2008-01-31 Dietrich Stauffer , Karl-Heinz Lampe

The Penna ageing model is based on mutation accumulation theory. We show that it also allows for self-organization of antagonistic pleiotropy which helps at young age at the expense of old age. This can be interpreted as emergence of…

种群与进化 · 定量生物学 2007-05-23 Stanislaw Cebrat , Dietrich Stauffer

A stochastic genetic model for biological aging is introduced bridging the gap between the bit-string Penna model and the Pletcher-Neuhauser approach. The phenomenon of exponentially increasing mortality function at intermediate ages and…

统计力学 · 物理学 2007-05-23 Zhi-Feng Huang , Dietrich Stauffer

We combine the Penna Model for biological aging, which is based on the mutation-accumulation theory, with a sort of antagonistic pleiotropy. We show that depending on how the pleiotropy is introduced, it is possible to reproduce both the…

统计力学 · 物理学 2009-11-07 A. O. Sousa , S. Moss de Oliveira

The death of a biological population is an extreme event which we investigate here for a host-parasitoid system. Our simulations using the Penna ageing model show how biological evolution can ``teach'' the parasitoids to avoid extinction by…

种群与进化 · 定量生物学 2009-11-13 Dietrich Stauffer , Ana Proykova , Karl-Heinz Lampe
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