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Reconstructing interactions from observational data is a critical need for investigating natural biological networks, wherein network dimensionality (i.e. number of interacting components) is usually high and interactions are time-varying.…

种群与进化 · 定量生物学 2021-02-09 Chun-Wei Chang , Takeshi Miki , Masayuki Ushio , Hsiao-Pei Lu , Fuh-Kwo Shiah , Chih-hao Hsieh

A major challenge in neuroscience is posed by the need for relating the emerging dynamical features of brain activity with the underlying modular structure of neural connections, hierarchically organized throughout several scales. The…

神经元与认知 · 定量生物学 2016-06-03 Pablo Villegas , Jorge Hidalgo , Paolo Moretti , Miguel A. Muñoz

The stochastic Hodgkin-Huxley neurons considered in this paper replace time-constant deterministic input $a dt$ of the classical deterministic model by increments $\vartheta dt + dX_t$ of a stochastic process: $X$ is Ornstein-Uhlenbeck with…

概率论 · 数学 2023-06-22 Reinhard Höpfner

We construct a model of cell reprogramming (the conversion of fully differentiated cells to a state of pluripotency, known as induced pluripotent stem cells, or iPSCs) which builds on key elements of cell biology viz. cell cycles and cell…

细胞行为 · 定量生物学 2017-09-25 R Hannam , A Annibale , R Kuehn

Several data-driven approaches based on information theory have been proposed for analyzing high-order interactions involving three or more components of a network system. Most of these methods are defined only in the time domain and rely…

应用统计 · 统计学 2025-03-18 Yuri Antonacci , Chiara Bara' , Laura Sparacino , Gorana Mijatovic , Ludovico Minati , Luca Faes

Recurrent neural networks are powerful tools for understanding and modeling computation and representation by populations of neurons. Continuous-variable or "rate" model networks have been analyzed and applied extensively for these…

神经元与认知 · 定量生物学 2016-01-29 Brian DePasquale , Mark M. Churchland , L. F. Abbott

How do humans and animals perform trial-and-error learning when the space of possibilities is infinite? In a previous study, we used an interval timing production task and discovered an updating strategy in which the agent adjusted the…

神经元与认知 · 定量生物学 2022-05-10 Jing Wang , Yousuf El-Jayyousi , Ilker Ozden

Repeating patterns of spike sequences from a neuronal network have been proposed to be useful in the reconstruction of the network topology. Reverberations in a physiologically realistic model with various physical connection topologies…

神经元与认知 · 定量生物学 2014-07-15 Hao Song , Chun-Chung Chen , Jyh-Jang Sun , Pik-Yin Lai , C. K. Chan

The macroscopic dynamics of large populations of neurons can be mathematically analyzed using low-dimensional firing-rate or neural-mass models. However, these models fail to capture spike synchronization effects of stochastic spiking…

神经元与认知 · 定量生物学 2023-04-20 Bastian Pietras , Noé Gallice , Tilo Schwalger

Echo state networks (ESNs) are a powerful form of reservoir computing that only require training of linear output weights whilst the internal reservoir is formed of fixed randomly connected neurons. With a correctly scaled connectivity…

机器学习 · 计算机科学 2021-08-03 Luca Manneschi , Matthew O. A. Ellis , Guido Gigante , Andrew C. Lin , Paolo Del Giudice , Eleni Vasilaki

Recurrent Neural Networks (RNNs) are widely used for modelling neural activity, yet the mathematical interplay of core procedures is used to analyze them (temporal rescaling, discretization, and linearization) remain uncharacterized. This…

神经与进化计算 · 计算机科学 2025-04-08 Mariano Caruso , Cecilia Jarne

Recurrent Spiking Neural Networks (RSNNs) have emerged as a computationally efficient and brain-inspired learning model. The design of sparse RSNNs with fewer neurons and synapses helps reduce the computational complexity of RSNNs.…

神经与进化计算 · 计算机科学 2024-03-07 Biswadeep Chakraborty , Beomseok Kang , Harshit Kumar , Saibal Mukhopadhyay

In this work, a neural network is trained to replicate the code that trains it using only its own output as input. A paradigm for evolutionary self-replication in neural programs is introduced, where program parameters are mutated, and the…

神经与进化计算 · 计算机科学 2021-10-06 Samuel Schmidgall

A fundamental aspect of behaviour is the ability to encode salient features of experience in memory and use these memories, in combination with current sensory information, to predict the best action for each situation such that long-term…

神经与进化计算 · 计算机科学 2021-06-25 Stephen Kelly , Tatiana Voegerl , Wolfgang Banzhaf , Cedric Gondro

This study presents a system integration approach for planning schedules, sequences, tasks, and motions for reconfigurable robots to automatically disassemble constrained structures in a non-destructive manner. Such systems must adapt their…

机器人学 · 计算机科学 2025-09-19 Takuya Kiyokawa , Tomoki Ishikura , Shingo Hamada , Genichiro Matsuda , Kensuke Harada

Learning is a complex dynamical process shaped by a range of interconnected decisions. Careful design of hyperparameter schedules for artificial neural networks or efficient allocation of cognitive resources by biological learners can…

无序系统与神经网络 · 物理学 2025-07-11 Francesca Mignacco , Francesco Mori

The idea that complex systems have a hierarchical modular organization originates in the early 1960s and has recently attracted fresh support from quantitative studies of large scale, real-life networks. Here we investigate the hierarchical…

数据分析、统计与概率 · 物理学 2010-04-20 D. Meunier , R. Lambiotte , A. Fornito , K. D. Ersche , E. T. Bullmore

Recurrent neural networks in the chaotic regime exhibit complex dynamics reminiscent of high-level cortical activity during behavioral tasks. However, existing training methods for such networks are either biologically implausible, or…

神经元与认知 · 定量生物学 2015-12-09 Thomas Miconi

Spiking neural networks have gained significant attention due to their brain-like information processing capabilities. The use of surrogate gradients has made it possible to train spiking neural networks with backpropagation, leading to…

神经与进化计算 · 计算机科学 2023-05-24 Dongcheng Zhao , Guobin Shen , Yiting Dong , Yang Li , Yi Zeng

Recurrent neural policies are widely used in partially observable control and meta-RL tasks. Their abilities to maintain internal memory and adapt quickly to unseen scenarios have offered them unparalleled performance when compared to…

机器学习 · 计算机科学 2026-02-03 Jin Li , Yue Wu , Mengsha Huang , Yuhao Sun , Hao He , Xianyuan Zhan