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This article describes algorithms for the hybrid parallelization and SIMD vectorization of molecular dynamics simulations with short-range forces. The parallelization method combines domain decomposition with a thread-based parallelization…

材料科学 · 物理学 2017-09-13 Chris M. Mangiardi , Ralf Meyer

We investigate the global scheduling of sporadic, implicit deadline, real-time task systems on multiprocessor platforms. We provide a task model which integrates job parallelism. We prove that the time-complexity of the feasibility problem…

操作系统 · 计算机科学 2008-05-22 S. Collette , L. Cucu , J. Goossens

Nested parallelism exists in scientific codes that are searching multi-dimensional spaces. However, implementations of nested parallelism often have overhead and load balance issues. The Orbital Analysis code we present exhibits a sparse…

分布式、并行与集群计算 · 计算机科学 2017-08-01 Benjamin James Gaska , Neha Jothi , Mahdi Soltan Mohammadi , Kat Volk , Michelle Mills Strout

We describe source code level parallelization for the {\tt kira} direct gravitational $N$-body integrator, the workhorse of the {\tt starlab} production environment for simulating dense stellar systems. The parallelization strategy, called…

We present an algorithm for cluster dynamics to efficiently simulate large systems on MIMD parallel computers with large numbers of processors. The method divides physical space into rectangular cells which are assigned to processors and…

高能物理 - 格点 · 物理学 2009-10-22 Mike Flanigan , Pablo Tamayo

The modeling of atmospheric processes in the context of weather and climate simulations is an important and computationally expensive challenge. The temporal integration of the underlying PDEs requires a very large number of time steps,…

数值分析 · 数学 2020-01-03 Francois P. Hamon , Martin Schreiber , Michael L. Minion

We present a computational algorithm for computing short range forces between particles. The algorithm has two distinguishing features. First, it is optimized for multi-processor computers, and will use as many processors as are available.…

天体物理学 · 物理学 2008-02-03 Robert C. Ferrell , Edmund Bertschinger

Calculating the correlation in a sliding window is a common method of statistical evaluation of the interconnect between two sets of data. And although the calculation of a single correlation coefficient is not resource-intensive and…

数据结构与算法 · 计算机科学 2018-07-18 Alexey Poyda , Mikhail Zhizhin

An efficient parallelization approach to simulate optical properties of ensembles of quantum emitters in realistic electromagnetic environments is considered. It relies on balancing computing load of utilized processors and is built into…

计算物理 · 物理学 2023-02-01 Maxim Sukharev

Using a Newtonian model of the Solar System with all 8 planets, we perform extensive tests on various symplectic integrators of high orders, searching for the best splitting scheme for long term studies in the Solar System. These…

地球与行星天体物理 · 物理学 2015-06-11 Ariadna Farrés , Jacques Laskar , Sergio Blanes , Fernando Casas , Joseba Makazaga , Ander Murua

Optimistic parallelization is a promising approach for the parallelization of irregular algorithms: potentially interfering tasks are launched dynamically, and the runtime system detects conflicts between concurrent activities, aborting and…

编程语言 · 计算机科学 2012-06-28 Francesco Versaci , Keshav Pingali

This article presents the parallel implementation of the coupled harmonic oscillator. From the analytical solution of the coupled harmonic oscillator, the design parameters are obtained. After that, a numerical integration of the system…

分布式、并行与集群计算 · 计算机科学 2017-02-09 Anas M. Al-Oraiqat

Context. Due to our increasing knowledge on the Galactic and stellar neighborhood of the Solar System, modern long-period comet motion studies have to take into account both stellar perturbations and the overall Galactic potential. Aims.…

地球与行星天体物理 · 物理学 2022-01-12 Piotr A. Dybczyński , Sławomir Breiter

This paper addresses the problem of parallelizing computations to study non-linear dynamics in large networks of non-locally coupled oscillators using heterogeneous computing resources. The proposed approach can be applied to a variety of…

混沌动力学 · 物理学 2025-07-04 Oleksandr Sudakov , Volodymyr Maistrenko

Optimal multiple sequence alignment by dynamic programming, like many highly dimensional scientific computing problems, has failed to benefit from the improvements in computing performance brought about by multi-processor systems, due to…

分布式、并行与集群计算 · 计算机科学 2023-11-30 Manal Helal , Hossam El-Gindy , Lenore Mullin , Bruno Gaeta

Recent years have witnessed an unprecedented increase in experiments and hybrid simulations involving quantum computers. In particular, quantum annealers. Although quantum supremacy has not been established thus far, there exist a plethora…

量子物理 · 物理学 2019-12-10 Konrad Jałowiecki , Andrzej Więckowski , Piotr Gawron , Bartłomiej Gardas

Several classic problems in graph processing and computational geometry are solved via incremental algorithms, which split computation into a series of small tasks acting on shared state, which gets updated progressively. While the…

数据结构与算法 · 计算机科学 2020-03-24 Dan Alistarh , Nikita Koval , Giorgi Nadiradze

A review of the literature reveals that while parallel computing is sometimes employed by astronomers for custom, large-scale calculations, no package fosters the routine application of parallel methods to standard problems in astronomical…

天体物理学 · 物理学 2007-05-23 M. S. Noble , J. C. Houck , J. E. Davis , A. Young , M. Nowak

This report discusses the implementation of two parallel algorithms on a distributed memory system for studying vortex dynamics in type-II superconductors. These algorithms are the same as that implemented for classical molecular dynamics…

超导电性 · 物理学 2007-05-23 Mahesh Chandran

An algorithm is discussed for converting a class of recursive processes to a parallel system. It is argued that this algorithm can be superior to certain methods currently found in the literature for an important subset of problems. The…

计算物理 · 物理学 2009-11-10 W. R. Gibbs